FastQCFastQC Report
Sat 31 Dec 2022
SRR5847006.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847006.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39085
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT4441.1359856722527824No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC4351.1129589356530638No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTGTCTCTTATACA970.24817705001918897No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAA860.22003326084175512No Hit
TATTGAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA850.2174747345528975No Hit
ATCTTGGGGGAAGTGCAGCTCATGTTTTTAACTTTTAATTTAAAAACACAAA790.20212357681975182No Hit
AATTGCGGGGTTTACTGGCCTTGTTTCACTTTTATTCCTTGCAGTGTCCTGT790.20212357681975182No Hit
CACGCAGGGATTCAGGTAATCTATTCCTAAGTAGCTTTCAAGCAGTCAGAAA780.1995650505308942No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTGTCTCTT720.1842138927977485No Hit
CGCGTAGGGACCCATCGTCTGGGATGTGAGGAGCGCCTCTGCCCGGCCACCC690.17653831393117564No Hit
TGGTCAGGGTCCACATGTCTTTATGTATATAAACATGTACTCATACTGCCAA680.17397978764231803No Hit
CTATGCGGGATATCCTAACTGATACCTTTTAAAGAACAGCCAAACAGATTTA670.17142126135346042No Hit
CTTAGCGGGGGCCTTCATGATTCAATTATCTCCCACCGAGCCTCTCCCACGG670.17142126135346042No Hit
AGCTCGGGACCTTGTAACGCGGGAACTATAGTTTTTGTTTCAGAATGTTGTT670.17142126135346042No Hit
ATTTTAGGGATTAAAAATGATTCAGATTTATATTTGAGATCATTTTAGTCTT650.16630420877574517No Hit
ATGTCGGGGGTGTAGAGCAACTTTATTTGTAATAATCGAAACATGGAATCAG650.16630420877574517No Hit
AGCAAGGGGATATTTTCTCTGTTTTTTATGTTGTTGTTGTTTCTACAAGCAG650.16630420877574517No Hit
TTGCCGGGACCCTCCTCTGGCGGTCCTTCCACCTTCCTCTGTCCTCCGGATG640.16374568248688756No Hit
AGTCCTGGGGTAAAAAGTCATCTTTCCCTCACAGAAAGAAACGAAAGAAAGC640.16374568248688756No Hit
CCGTACGGGATTCCTCTTTCCTGTTCTACATGGGTTTTCACACATACTTGCT640.16374568248688756No Hit
TCTGTAGGGACCTTTGGACAATTATTTGTCATTATCTGCTGAAGCTTGCTAT630.16118715619802992No Hit
CAGCTAGGGACCTGTTCAATAGTCTGCCATTCTTCTCAGAAATGGGATATTA630.16118715619802992No Hit
TGGATAGGGATCTCCAGGTAGGAAAAAATGAAAGCTATTTCATGCAAACATT620.15862862990917231No Hit
ACATATGGGATGGCTTTCAGCTTATCTTATGTTCTATCTTTTGGTTCATATT620.15862862990917231No Hit
CATGTAGGGAACTTCCTTATTTTTGGAGAATTTTAGGAATACTCAATTTACA610.1560701036203147No Hit
TTTTAAGGGGGGATTGCAGGCGTGAGCCACCACGCCCAGCCCAATTCATTTT610.1560701036203147No Hit
ATTGTTGGGCCTGCCACTACTCATATGTTTGCATTGGATATATATTGCATCT600.1535115773314571No Hit
GCTGCGGGAAGGGAGGAAAAAGATGTTAAACTTTGTTTTGTAAATGCTAATA600.1535115773314571No Hit
ATCAGAGGGAGAAGGAAAGGATGCAGTAGCATAGTCACCTGGAGCTAATTCT600.1535115773314571No Hit
GTATTAGGGATGTCCATTTTTACTGCAAACATGAGGGAAAATTCCTGTTGTG600.1535115773314571No Hit
TGGTATGGGATTTGATTAAATCCTTCTCCTTATTCGAATTTCAGTTTAAGTG590.15095305104259946No Hit
GTTAAAGGGGCTCTTCGTTAAGTCGGCCTTCCCAACATGGCGCAGTCTATTA590.15095305104259946No Hit
GATTAGGGAAGGAGTCAAATTTATTTTCCCAATTCAACTTCATAATTATCAT590.15095305104259946No Hit
TGTACAGGGCAGGATGTGGTAGATACTTTAACAAAGAGTAGAACTATTACCA590.15095305104259946No Hit
GTAAGTGGGATGTGGAGAAAAGGAAACCCTTGTACATTGTTGGTGGGAATGT580.14839452475374185No Hit
GTGCCCGGGAGCACTTATGTATACACTTTTTCTGTACTTACTAGGTTAAGGC580.14839452475374185No Hit
ATCAGAAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG570.14583599846488424No Hit
CGTAATGGGGGAGATCCTTTAACGGAGTGGGATGGGTGGATTTACAAAGAAG570.14583599846488424No Hit
GTCAGCGGGACGAGAGCGAGAGCGGGACCGAGAGAGAGAAGAGGAAAAGAAG560.1432774721760266No Hit
TGTGGAGGGAAGGTCCCATAGCTACATGGTACAGGGCTGTTGTCTGCTTGCT550.140718945887169No Hit
ATTCGCGGGACCAGTTAAGAGAATTTACCTGGAGGAATTTTTCACAATAAAT550.140718945887169No Hit
CCTAATGGGAGCAAGAAAAAATGTAAAGAAATTAAAGGGTAATTTGTGACTT550.140718945887169No Hit
TTTGCTGGGACATAAACAGAATTTTAAAGAAACTATATGATCATCTCAACAG550.140718945887169No Hit
GTGCGTGGGAGCGGGGTGCCAAGTCGTTTTCTGTGTGGGTTGAGAGACAGGC550.140718945887169No Hit
CAATAGGGGACTGCAGAGTTCAGTCGAGAGTTCCAGTTGCACCAGCATCTCT540.13816041959831138No Hit
GGCACTGGGAGCTCAAGTTTGGGGTCTCTCTCTCTCTCTTTTTTTTCTTTTT540.13816041959831138No Hit
GGTTGAGGGACAAAAAGTGAAAAATACAGTGTTTACTTGAAATTTTAACTTT540.13816041959831138No Hit
CTCTCAATGGGGAATTAAATTAAGTTTTGTAATTTTAAACTTTAAAAACTTC530.13560189330945374No Hit
TAACAAGGGACATAATCGGAAGTAAACACTCCTCAGCAAATGCAAAAGAACT530.13560189330945374No Hit
GACGCAGGGTCCGATCTTAAGAAGGGATGTGTGGCCACATGGGATGGGCCAG530.13560189330945374No Hit
TGCACAGGGAGATTAAAATATAAGCACTCAATAAAATATAACCTTTAGAAGC530.13560189330945374No Hit
GTAAAGGGGCTATACCCGGGATCTAGATTGTTTCCATTTTGGGGTTATTAGA530.13560189330945374No Hit
TTGTTGGGGCATACTTGTCTATTTTAAAGCAGGACTGCAATGCTTTAATAGG530.13560189330945374No Hit
TTGCATGGGGACAGGCTGCTCCCCAGAATACTGAAGAAGAAACTCTAGGAGT520.13304336702059613No Hit
TAAATGGGGAGAGGAATTGAATTTAAAAATGAGAGAGTATTAAAACTCATGT520.13304336702059613No Hit
GTATCAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC520.13304336702059613No Hit
TAATTTGGGACAGAAGTGTATGTTTCCATTCGCATGAAATTCTAGAAGAGGC510.13048484073173852No Hit
ATGTATGGGAAGTGGTACAGTGAATTTGCTTTAACAGATGTTGAAAACTAAA500.1279263144428809No Hit
TCTGGTGGGACCCCCAGCCTGATTTACACATATTTTCTACTGCTCTATAGGT500.1279263144428809No Hit
TTGTCAGGGACAGTTTGACAACAAAATGTTAACATACATGCTTATGTTCAGT490.12536778815402327No Hit
CGCTACGGGATTACTGGTTTGTCTACCACCAAAAATTACTTAAATTCCAGGA490.12536778815402327No Hit
CATCACGGGCGATCTTCAAGGGGGCTTAGGACTTGGTTGCCTCAAGTGTCCT490.12536778815402327No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCCTGTCTCTTATAC480.12280926186516566No Hit
GCTATAGGGACTCCCTGTGACTTTGGGGCCAATTCCTCTGACAGTTAGAAGG480.12280926186516566No Hit
GCATATGGGATGCCTATGGAATAATCTCCATTTCCAGAGTGGATAAACTTGA470.12025073557630804No Hit
GTCAAAGGGATCTCACCGTCCTTTGGTTGCTTTACCTTGTATACTTACAGTA470.12025073557630804No Hit
ATGAAGGGGATACAAGAGATGTCCTTCATCTAGGAGATGGCTGCTGAAGTAT470.12025073557630804No Hit
AGGTCTGGGGCGCAGCTCATTCTTGGAATCCCAGAACAGGCCTTAAGTCTTC470.12025073557630804No Hit
TATTGTGGGAGACCTCTCAGCGGCTCCATCCTTTACTTCTTTTAAAGCTGAT470.12025073557630804No Hit
CTATTAAGGGAGTTTCTAATGCATCAAATATATACCTCAGTTTTCATGATTT470.12025073557630804No Hit
CAGCCCGGGAAGACGAGGATTCTCAACGTCCAGTCCAGGCTCACAGACGCCA470.12025073557630804No Hit
AGTACAGGGAAGGAAAAAATGAAGGAGCTGTCCATGCTGTCACTGATCTGCT470.12025073557630804No Hit
AGCTTGGGGATCCATGGCTCATTTGACACCTTTTTAAATATCAGGACAAGTC470.12025073557630804No Hit
GCTGACGGGAGAACAAGCCTTAGGAAAGACATTACTACCTATGGAAAACATG470.12025073557630804No Hit
CGTTCTGGGCTCTTTACGGACTCCACTTATGACTCCCTAAAGCCCATGTCGA460.11769220928745043No Hit
TATTCAGGGACTATCAGAAAGTGAATAAGAAAAATGAACACGGCAAATTTAG460.11769220928745043No Hit
TCGTGCAGGGATCCTCAGAGAGGACTGGAAGCCAGTCCTTACGATAAACTCC460.11769220928745043No Hit
TTGCTAGGGCTCATGTAGGGATGGCCATTATACCAAATATTGGGAGGACCTG460.11769220928745043No Hit
GGTTTTGGGGAAAGGTATTTTTTTAATATAAATTTATTGATACTATGAGTTT460.11769220928745043No Hit
ATTATAGGGATTTGTATACTTATGATTTTCCTTTTTGCTAAGTATAAGTATT460.11769220928745043No Hit
ATATTCGGGAGATGTTTCATTTGAACTTTAAAATATTTGTATTCTGCTGTTG460.11769220928745043No Hit
TATTGAGGGACTTTTTTTCCAGTAAGAATATCAAGGCAGAAGGTGGGAAGGA460.11769220928745043No Hit
AAACAGGGATTCTAGAATTTAAAGTTCTAAGATTAGTATAAAGAGTATATAG460.11769220928745043No Hit
GATGCGGGGATATACCTCTTCTTTCTACTTACTGTGTACTGGGTTTCCCAGC450.1151336829985928No Hit
GTGAACGGGATAAAATATTTAAGTATTTGAAAAAGAAACAAAATGTCTTCAT450.1151336829985928No Hit
TACAGCGGGATGGGATAGCTCTCCTTTTTTTGTGTTCTTTTCATTTTTTATC450.1151336829985928No Hit
CGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGACACTGTCTCAAAAAAAA450.1151336829985928No Hit
ACTAGGGTAAAGTTAGCAGTAGGAAGGGAATCCTACAGACTAGAGTGGAAAT450.1151336829985928No Hit
TGACGCAGGGGATCTTAGGTCGGGGAATCCAAATGTCTATCACAGGATAAGT450.1151336829985928No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGT450.1151336829985928No Hit
CGATCCCGGACCAGAAGTTCCTCTAGGTCTCGTAGCCGATCCCGTTCCCGTA450.1151336829985928No Hit
AACGGGGGAGTGTATAGAATTATGCATATAGTATAGATATGTATCATATAAA450.1151336829985928No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAACTGTCTCTTATACAC450.1151336829985928No Hit
CGTCCAGGGACATGCTTCTTTTTCAAGTCTAGAATTTCCATGTAGTTCATTT440.11257515670973518No Hit
AGCGTTGGGCTGGCAACAGATTGTAGTCTTACCTTGTTTTCTTCAATCTCAC440.11257515670973518No Hit
AGATTAGGGACCTTCAGCTAAAGCAGCTATTGACTGGTTTGATGGTAAAGAA440.11257515670973518No Hit
TCCACGGGGACACCGAGCGAGCGCCTGGGCCCGAAGGGAGCGATGCTGTGGT430.11001663042087756No Hit
TCATCAGGGGAGATGGGGTCGGAATTTGACACAGCCTAGGGCTTGGTTCTTG430.11001663042087756No Hit
GTACCGGGGAGGAAACTAGGGTGTCACTTTTTTTGCACTGCAGCATATACAC430.11001663042087756No Hit
TAGCAAGGGTATCCACTGCACATAAGCACTTACACTGCAGGTAGGAAAATAT430.11001663042087756No Hit
TAGACGTGGGTTCATAAAAAACAATAGTACTGTGCCTCTTTCTTCTCAAACA430.11001663042087756No Hit
TCTAGTGGGCCGATCTGGTTGTGGGGAATGTCTGAATGAAACAATTATTAGA430.11001663042087756No Hit
TATTTAGGGTCTGATCCGGGGAACACAAGTTGCTATAAGCAGTCCTTGTTGG430.11001663042087756No Hit
GTACCAGGGCAGCAGGCTGGTTTTAACCTACGCAAAGTTAACAAACACATAA430.11001663042087756No Hit
GGTCCAGGGGCTCTGGCCCAGAAGGAGGCCAAGAAGGACGAGCCCAAGAGCG430.11001663042087756No Hit
AGTATCGGGATAAACGAACATTGAACAGAATGATAGCATTTTTCCTCTCTTC420.10745810413201996No Hit
AAATATGGGAGGACAAAAGAAAGAAAAATAAATAAAGAAGTAGTCTCTTATT420.10745810413201996No Hit
GCCGTAGGGCAGGGAAAACAATAATCCAAAAGGATTAAAAGGAACAGTGCAA420.10745810413201996No Hit
GCATCCGGGTAGCTTAATCAGAAAGCCTCTCCAGAGAAGTTTGGTTTCTTTG420.10745810413201996No Hit
TGGTAAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA420.10745810413201996No Hit
CAGACTGGGGATATATTAAAAACCACATGTGGGAATTCTTTCCTAATTTTAG420.10745810413201996No Hit
GTGCATGGGGGCCACCTCTATGAACTTGATGGACGAATGCCTTTTCCGGTGA420.10745810413201996No Hit
TAAGCGGGGACACTTTGTTAGGACGAGTCTTTCAGATTTTTCCCTTGATCTT420.10745810413201996No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAA420.10745810413201996No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAAACTCGTATGC420.10745810413201996No Hit
GTTTTGGGTGTTCTGATCACTACTGACTTGTTGGCTCGCGGGATTGATGTGC420.10745810413201996No Hit
TTCGCCGGGCTAGTCCCGGGATTGTACTTTTTGTTTTTGTTATAAAGGAAGA420.10745810413201996No Hit
GTCCAAGGGGTAAGTAAATCTACTTTATAAAGGCACAAATATATTCACAGTA420.10745810413201996No Hit
TGGCCTGGGTAAAATAGGAAAAAGAAATTTCTACATTATAAAATGGCTTCAG410.10489957784316234No Hit
TACCAGGGGTGCCTAATAAATACAGGGTTTCCTTCTGGGAATGATGAAAACG410.10489957784316234No Hit
AGTGACGGGCTGCTGAAGTTTTGGTGCCCACTGAAATTTTATGCTCAAAGTA410.10489957784316234No Hit
CACAGGGGGTGACTTGTAGTGTGTTGGTGAAATGCATGCAGGAAAATGCTGT410.10489957784316234No Hit
GCCGTTGGGAGAGTTCTGCCTGTTACAAAGCTACAGAACTGTATTGTTTTTA410.10489957784316234No Hit
CATGGCGGGGGAGCTGATGCAGAGGAGGAAGCAGCTACCCGAATACCTGCTT410.10489957784316234No Hit
AAACTTGGGAAGTAGCTGGGATTACAGGCACCTGCCACCATGCCCGGCTAAT410.10489957784316234No Hit
CTGTCTGGGACTGATCTAATTGTTTCGTTAACCACTAGAACCAGCAATCTCT410.10489957784316234No Hit
ACCATGGGGATATTTTTATTCTGATATCTTTTGTAATTTTGTTTTTAGTGAA410.10489957784316234No Hit
ACAATGGGGATATCAGATGGATATTCCTATCTCTATTTTACAGCAGAGGAAA410.10489957784316234No Hit
TGTATGGGGGGACCCCAGATTAACGAACCTCAGTTCTAACTCGGATGTCTGA410.10489957784316234No Hit
CTCAGCGGGGAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAAC400.10234105155430473No Hit
GCCAAACGGGGAAACTTAGACTATTTTCCATAAAATGAAATGATTGTATTAA400.10234105155430473No Hit
GGCACTGGGAATTTACCCTAAATTTTAATTGCCCTATAAGACTTCATAATAT400.10234105155430473No Hit
GTTTAAGGGACTGGAATGGAGCCCAGGAGAATCCTGCTGCAGTGCTGGATCT400.10234105155430473No Hit
CGACACGGGTACCAACTGGGTGACTTGGGTAAGTCACTTCTGGAGCTTCCTC400.10234105155430473No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAACTGTCTCTTA400.10234105155430473No Hit
AGCTGGGGGGTGGGAAGTCAATGTGAAAAACATTGCTGCATTCATGCAAGAC400.10234105155430473No Hit
AGCAAGAGGGACAGTAGTTGAAGTTTGGAACATAGCCAAATTAAAAATGGAT400.10234105155430473No Hit
TGCCGGGGCAACTTTAACATCAGAAGCATTTGGAGAGTTTATTAAACTACAG400.10234105155430473No Hit
GTCTCAGGGACATGGAGTCTGCTGCTTGTTTTTATAAGAAAGGTTTTTTGGA400.10234105155430473No Hit
TACAAAGGGATTTTATAGTAAGTCACATTTAGTAAGTCTACTGAATGTAAAA400.10234105155430473No Hit
GCAAAGGGGAGCTGTTCTACCTGAATCCTTAAACTTCATTTTCATGCAAGGA400.10234105155430473No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)