FastQCFastQC Report
Sat 31 Dec 2022
SRR5847004.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847004.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166162
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT8300.49951252392243717No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC7900.47543963120328353No Hit
TATGTTGGGAAATGAGAAGCATGATTTGGTATAAGAAAAACTTTGGTCCCTA1800.10832801723619119No Hit
GCTGGGGGACCCTGGGGCTTTTGTCACAATTTGCCTTTTTGTGGGTGTACGT1800.10832801723619119No Hit
TTGTTAGGGGGAACTTGAGTTATTAAAATCATAGGAATAAAATTATGGGATC1750.10531890564629699No Hit
GCTCAGGGAGACTAGACAGACAACCTACAGAATGGGAGAAAATATTTGAAAA1700.10230979405640278No Hit
ACTAGTAGGGATGAGTATGTTCAGCAAAATCATAAAACAACTACATAAGAGG1700.10230979405640278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)