FastQCFastQC Report
Sat 31 Dec 2022
SRR5847003.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847003.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166589
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT8710.5228436451386346No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC8540.5126388897226107No Hit
TTTAGCGGGTCACTGCTTAGATTAAACTTTTCCACATTTTTTGATCATGGAA2090.12545846364405813No Hit
TAATGGGAATGAACTCAAACAAATTTGCAAGAAAAAAACAAACAACCCCATC1980.11885538661016033No Hit
CATAAGGGAAATGCTACAATGCCACAATAAAACTTGAATGGACGAGGAGTTG1880.11285258930661687No Hit
AACGCTGGGGGAGTTCACCCGCGGCGGAGGGTAACTTTGCTGTGCTGTTTTT1800.10805035146378213No Hit
TATGTTGGGAAATGAGAAGCATGATTTGGTATAAGAAAAACTTTGGTCCCTA1800.10805035146378213No Hit
TTAAATGGGGAGAAAGAACTGCATAGTACTTGCTTTCTGTATTCCAGGCAGT1780.10684979200307344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)