FastQCFastQC Report
Sat 31 Dec 2022
SRR5847002.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5847002.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166175
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT8120.48864149240258764No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC7770.4675793591093726No Hit
GCTGGGGGACCCTGGGGCTTTTGTCACAATTTGCCTTTTTGTGGGTGTACGT2230.1341958778396269No Hit
TATGTTGGGAAATGAGAAGCATGATTTGGTATAAGAAAAACTTTGGTCCCTA2130.1281781254701369No Hit
ACAATCGGGTGGTGCGGGATTTAAAAAAATTCTAGCAGTTTTAATTTTATTT1820.10952309312471792No Hit
AGTCCTGGGCACTGAGGTCTGTTAGATGAAAGGATATGAGAAAGGTAATATT1780.10711599217692193No Hit
GCTCAGGGAGACTAGACAGACAACCTACAGAATGGGAGAAAATATTTGAAAA1780.10711599217692193No Hit
CATAAGGGAAATGCTACAATGCCACAATAAAACTTGAATGGACGAGGAGTTG1780.10711599217692193No Hit
TTTAGCGGGTCACTGCTTAGATTAAACTTTTCCACATTTTTTGATCATGGAA1740.10470889122912592No Hit
AACGCTGGGGGAGTTCACCCGCGGCGGAGGGTAACTTTGCTGTGCTGTTTTT1720.10350534075522792No Hit
GCCATAGGGATGAAATAGTTATTTAAAGCATATTTTAATAACTTGCAGTTTA1680.10109823980743193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)