FastQCFastQC Report
Sat 31 Dec 2022
SRR5846995.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846995.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences154062
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT11390.7393127442198596No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC9400.6101439680128778No Hit
GAGTCATCTGACACTGATGATGAAGAATTACGGCATCGAATCCGGCAAAAAC2610.16941231452272462No Hit
AGCCATGGGGAGGAAGCTATGTTTCAACACCTGCAGTAGGTGCCTGAAATCA2380.15448325998623932No Hit
CGTTCAGGGGTCGGCAGCCGCCTACACCAAGGCAACAGCGCGGAAGTGTTTG2140.13890511612208073No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTGTCTCTTATACA2100.13630875881138763No Hit
TAAATAGGGTAACTAATTCAGTTTGGGATTTAATTATACAATTAAATTATGA2080.1350105801560411No Hit
TACTTGGGGGGATGCCACTGCCCTGAAGGCCTGCAAGGTTCCACGCTTTGAG2060.13371240150069452No Hit
GTACAAGGGATATCAACACTGGAAAAGAGACTTCACTATTTTCGAAATTATC2030.13176513351767472No Hit
GATTAGGGGAACCATTTAATTCATACATGGATACCCCTGGGTTGCCTAAGAT2020.13111604419000142No Hit
ACAACTGGGGAATAAAGGCCATTTGACTTAGATCGCCATCCAAGGCTCTCTG1980.12851968687930831No Hit
ACAGCAGGGACACGCTTATGGATGTGTGTACCATTGAGATGAGAATGGGTAG1980.12851968687930831No Hit
TCCGCAGGGCTGTGCTTTTGTATGTATTCATTTAAATTGTCAAAAAGGATGT1950.1265724188962885No Hit
CAAGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1920.12462515091326869No Hit
ACGCCACTGGGATAAGAATTCATAAATTTGAATGATGTAGAGTTTGATTAAA1920.12462515091326869No Hit
TACTGGGGATCCAAACAACAGGTACAAATCGTATTGACACTATTCAACAAGG1900.12332697225792215No Hit
CATGAAGGGATAGCTTACGGTAGTAATGGCATGGATTAATTTTATTTGCATG1880.12202879360257558No Hit
GTAATAGGGTAACAAGGATGTGACCCATCCACGTATGCGGCGCTATATCAAG1870.1213797042749023No Hit
TCTCAAGGGATGGAGATGAATGGGCGGGGGGAGTTGGTGGAGTCACTCAAGA1850.12008152561955576No Hit
AATAGAGGGACAACTTTCATGCTTTTTCTTTATTTCTTGTATGCAGAATAAG1840.11943243629188248No Hit
ACAAGCGGGGGAAACCAGTGCTAAGAATGCAACGAATGTAGAACAGTCTTTC1820.11813425763653594No Hit
GCATTAGGGAATTAGCCTGAAAAATATTTCAGGTAATGGTGTGGATTGGCCT1810.11748516830886266No Hit
TTGCGCGGGTGAAGCAGATAGAATGCTTGATATGGGCTTTGAACCCCAAATA1800.11683607898118939No Hit
AACCGTGGGGCCTACAGACAGACATACATAGACATTTCAAAATTAATAGCTT1790.11618698965351612No Hit
GAGTCTGGGAGGAGACGATAAAGTAGAAAGTTGGAGTCAAACACTGGATGCA1780.11553790032584285No Hit
CGTCGCGGGGCTCTTCCGATCTAAAAGTGGGTAGGCACAAGCGATTAAAAGT1750.11359063234282303No Hit
GTTAAAGGGGGTAAAGGCTATGAAATCCACAGTGATTCCCACCCTGGCCACA1740.11294154301514975No Hit
TGCAACGGGAGGAAGGAGGAAGAAAAATTTCTCCTGAAGAATTCATTGGAAA1710.11099427503212993No Hit
GTTAGTGGGCCACCTGCACATCTATTTGTTCTTCATTATCTTTGGCAGCTTT1710.11099427503212993No Hit
TGAAGTGGGATTGACCAAGGAAGAAAGAGATAAGAGCCTTTCTTTTTTTTTC1700.11034518570445664No Hit
ACGCTGGGGCAACTCCACCTCCTGGTGTAGGAGTGGCAACATCATGTTGACA1700.11034518570445664No Hit
ATGTAAGGGAAGATTCAATCTAAGAATATACATTGAATTAAGTTGTCATATC1680.1090470070491101No Hit
CATTGAGGGAATCATGAGAAAGAAGAGTAAATCTGAAAACTTGATACCTCCT1650.10709973906609027No Hit
AAAGGCGGGATTGCTTTCAGCCCTGCATTGCTGAAATAGATCACCACATGTT1650.10709973906609027No Hit
AACCGTGGGAGAGGAGTTTGTTATTACCCACTTTCTGAAGCCTACTTCTGTC1650.10709973906609027No Hit
TGTAGTGGGGACATAGGAAAATGCTTAAGACTTAAAAAGGAAAGATTTAAAA1640.106450649738417No Hit
CTGACAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1640.106450649738417No Hit
CTTCTCTAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1640.106450649738417No Hit
CAACTAGGGAGCATTAAATTTAATTAATGTCTAATTTGTTTACTTGGTTTAG1640.106450649738417No Hit
TTTGCAGGGATGCCTGTAATTCAACACCTTAAAGTGGACAAATTCCTTGAAA1620.10515247108307045No Hit
AGGCATGGGCCTAAAATCAATTCTCCATTTTTTATCATATGTGGGATTTGTT1610.10450338175539717No Hit
GCTACGGGCTGGAGAAACAGAAAAGAGCCAGGCTGCAGTACGAAAAGCAAAT1610.10450338175539717No Hit
GTGCGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1600.10385429242772391No Hit
AGCTGGGGAGTGTGGGAAGTGGTGGGAGGGTGAGTCAGATCAGCCCACAGAA1600.10385429242772391No Hit
TTCGGAGGGCACTCTTGCCTTAAGACAAAATAATAATTATTCTTAATAGGAA1600.10385429242772391No Hit
AGAACAGGGGATGCTTTGATTGTTATTCCTGGGCTTCTGGGCTTATTTACAA1590.10320520310005063No Hit
GTGCTTGGGAGAGCTTTCCTCTTTACTTCAAACAGCAAAAAAGTGGGGGGCA1590.10320520310005063No Hit
TAGGTGGGGTTGCTTTTCTTTGTTTTGTGAATGTTCTAGCTATAAAAATACC1580.10255611377237735No Hit
GTCAGTGGGCCTCTCAATGTAGGTTTTAAAAAGACAGGGAAGTGCAGCACAT1580.10255611377237735No Hit
TAAGCCGGGAAAAGTAGAAAGCTTTAGGGAATAGATTGTGTAGAAAGTAAAT1570.10190702444470409No Hit
GTATTTGGGATTTGGATGGGAGATAGGCTCATGAGCCTGGAATATCTTTTTC1570.10190702444470409No Hit
GAAGCTGGGATGGTGCCCCCTGGGGGGCACAGCCAGAAACTGAACTGGCCGC1550.10060884578935753No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTGTCTCTT1550.10060884578935753No Hit
GAAATGGGGATGAAACCTTCTTCAGAATAGATCTCATATTAGGCCATAAAAT1550.10060884578935753No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)