FastQCFastQC Report
Sat 31 Dec 2022
SRR5846994.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846994.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155458
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGCCGTCT10510.676066847637304No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTCGTATGC9790.6297520873805144No Hit
GAGTCATCTGACACTGATGATGAAGAATTACGGCATCGAATCCGGCAAAAAC2680.1723938298447169No Hit
ACGCCACTGGGATAAGAATTCATAAATTTGAATGATGTAGAGTTTGATTAAA2470.15888535810315327No Hit
AGCCATGGGGAGGAAGCTATGTTTCAACACCTGCAGTAGGTGCCTGAAATCA2440.15695557642578703No Hit
CGTTCAGGGGTCGGCAGCCGCCTACACCAAGGCAACAGCGCGGAAGTGTTTG2330.14987971027544417No Hit
GATTAGGGGAACCATTTAATTCATACATGGATACCCCTGGGTTGCCTAAGAT2170.13958754132949094No Hit
GTACAAGGGATATCAACACTGGAAAAGAGACTTCACTATTTTCGAAATTATC1990.12800885126529352No Hit
TGCAACGGGAGGAAGGAGGAAGAAAAATTTCTCCTGAAGAATTCATTGGAAA1940.12479254846968313No Hit
TCCGCAGGGCTGTGCTTTTGTATGTATTCATTTAAATTGTCAAAAAGGATGT1920.12350602735143898No Hit
AGCATAGGGGCAGTTCGGCGGTCCCGCGGGTCTGTCTCTTGCTTCAACAGTG1910.12286276679231689No Hit
ACAACTGGGGAATAAAGGCCATTTGACTTAGATCGCCATCCAAGGCTCTCTG1890.12157624567407276No Hit
TAAATAGGGTAACTAATTCAGTTTGGGATTTAATTATACAATTAAATTATGA1860.1196464639967065No Hit
GTCAGTGGGCCTCTCAATGTAGGTTTTAAAAAGACAGGGAAGTGCAGCACAT1860.1196464639967065No Hit
CTTATACACATCTCCGAGCCCACGAGACTTTCCGAAATCTGTCTCTTATACA1850.11900320343758443No Hit
ACAGCAGGGACACGCTTATGGATGTGTGTACCATTGAGATGAGAATGGGTAG1820.1170734217602182No Hit
GTGCGTGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1800.11578690064197403No Hit
CAGATAGGGTGAGTTTGAAATTGTTAGCATCATTCAACTAATATGCGTATAG1800.11578690064197403No Hit
TGCGGATTGGGAATGACACAGAAGACAGCAAAGAAACTCCCACTGACCACAT1790.11514364008285195No Hit
TACTTGGGGGGATGCCACTGCCCTGAAGGCCTGCAAGGTTCCACGCTTTGAG1790.11514364008285195No Hit
CTTCTCTAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGG1760.11321385840548571No Hit
GCATTAGGGAATTAGCCTGAAAAATATTTCAGGTAATGGTGTGGATTGGCCT1750.11257059784636365No Hit
TACTGGGGATCCAAACAACAGGTACAAATCGTATTGACACTATTCAACAAGG1730.11128407672811949No Hit
GTTAGTGGGCCACCTGCACATCTATTTGTTCTTCATTATCTTTGGCAGCTTT1730.11128407672811949No Hit
GCTACGGGCTGGAGAAACAGAAAAGAGCCAGGCTGCAGTACGAAAAGCAAAT1730.11128407672811949No Hit
CTACACCGGGATGACTATGCAGTTTCTAAACATACACATAGAAGCTGAGTCT1730.11128407672811949No Hit
CGTCGCGGGGCTCTTCCGATCTAAAAGTGGGTAGGCACAAGCGATTAAAAGT1700.10935429505075325No Hit
CAAGCAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1690.10871103449163118No Hit
GCAATGGGGTGTGAAAGGAACTAGTCCTGTCATTTTACAGATAAGAAAATTA1690.10871103449163118No Hit
GTTAAAGGGGGTAAAGGCTATGAAATCCACAGTGATTCCCACCCTGGCCACA1680.1080677739325091No Hit
AGCTTTGGGAAGACTTTTTTCCCCTGTAATTTTGCTTTAAATAACTACTTGT1670.10742451337338703No Hit
TCTCAAGGGATGGAGATGAATGGGCGGGGGGAGTTGGTGGAGTCACTCAAGA1660.10678125281426494No Hit
GTGCTTGGGAGAGCTTTCCTCTTTACTTCAAACAGCAAAAAAGTGGGGGGCA1660.10678125281426494No Hit
TTGCGCGGGTGAAGCAGATAGAATGCTTGATATGGGCTTTGAACCCCAAATA1660.10678125281426494No Hit
AGCCTGGGGTTTGGTTCTGGCATGCTATTTTTATAGTGTCAAGTTTCTTGCT1650.10613799225514285No Hit
TAAGCCGGGAAAAGTAGAAAGCTTTAGGGAATAGATTGTGTAGAAAGTAAAT1650.10613799225514285No Hit
GTAATAGGGTAACAAGGATGTGACCCATCCACGTATGCGGCGCTATATCAAG1650.10613799225514285No Hit
AGAACAGGGGATGCTTTGATTGTTATTCCTGGGCTTCTGGGCTTATTTACAA1640.10549473169602079No Hit
CTAGACGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1640.10549473169602079No Hit
CGTAGCGGGCCTGGGTCCTCCTAATTCTTAGTCCTTTAATACCTGTTTTTCT1640.10549473169602079No Hit
GTAGCCGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1630.10485147113689872No Hit
GATTGTGGGGGAACTGAATTTAGGAGGATGGGCCTTCACTTAATTTTATGTT1630.10485147113689872No Hit
GCATGTGGGATTGGTGTTTAAAGTAAAGGTTAACATCTGTAGCTTTTCCAGG1630.10485147113689872No Hit
TGAAGTGGGATTGACCAAGGAAGAAAGAGATAAGAGCCTTTCTTTTTTTTTC1620.10420821057777663No Hit
AACCTAGGGATGCTACAACTGGTAACAATGACCAGAAGCCTGAAGAATTAAA1620.10420821057777663No Hit
TTCGGAGGGCACTCTTGCCTTAAGACAAAATAATAATTATTCTTAATAGGAA1620.10420821057777663No Hit
AATAGAGGGACAACTTTCATGCTTTTTCTTTATTTCTTGTATGCAGAATAAG1620.10420821057777663No Hit
AAATGAGGGATTTAATGGCAATGCAAAAGTCTTCCTGCTTCCGTGCTGAACT1610.10356495001865457No Hit
AACAGTGGGGACGCTCTTTCGATCTCTTTTCGGGAAATGGCATTGGATTTCT1600.10292168945953248No Hit
AACTATGGGAGATTCTAAATCGTACTCCCCATACAGTCAGAGGCAGGGAGTC1600.10292168945953248No Hit
CTTGCAGGGCTGAGGGACAGAGGATCGGAATGGAAACCACCAACGTGCACTG1600.10292168945953248No Hit
TATTTAGGGGAGAGCCATCCTTATATGTGTTCTGTGAGTAGGGATGAGGAGG1590.10227842890041039No Hit
CGCAAAGGGATTGCATTAACCTGGGAAGGCACCCTCTAGGTAGATTTGTATA1580.10163516834128832No Hit
TGCCTGGGGGATTCAAGGAACTGCAGATAAAAACTATTCAGAAAAAGAAATT1580.10163516834128832No Hit
GAAATGGGGATGAAACCTTCTTCAGAATAGATCTCATATTAGGCCATAAAAT1580.10163516834128832No Hit
GCACTTGGGAGCACAGTCCTTATTGCAGAAAGATCAGACTAGCAAATGATTA1570.10099190778216625No Hit
TTTCGAGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1570.10099190778216625No Hit
GTTACAGGGCATTACAGAAGGCATATCACCTTCTACTCCCTCTATAATAAAT1560.10034864722304417No Hit
TCTCTGGGGAATTTTAATAATTAGTTTTTTAAGTACTTGATTTTATGGGCAC1560.10034864722304417No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)