FastQCFastQC Report
Sat 31 Dec 2022
SRR5846968.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846968.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences282118
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGCTGAGGTATCTCGTATGC9160.32468683316909946No Hit
CTTATACACATCTCCGAGCCCACGAGACGCTGAGGTATCTCGTATGCCGTCT5020.17793972734813093TruSeq Adapter, Index 2 (95% over 21bp)
AGCGTGGGGTTGACCCTAAAAGGTAGCTGGCAGGGGCAAGATGGGGGCCAGC2960.10492063604590987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)