FastQCFastQC Report
Sat 31 Dec 2022
SRR5846891.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846891.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences166763
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACAAGGAGCTATCTCGTATGC4390.2632478427468923No Hit
CTTATACACATCTCCGAGCCCACGAGACAAGGAGCTATCTCGTATGCCGTCT4110.24645754753752333RNA PCR Primer, Index 38 (95% over 21bp)
GAACCCGGGATTTTCATGGATTGGAAGGCTCATCATAGTAAAGACATTGATT1900.11393414606357526No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)