FastQCFastQC Report
Sat 31 Dec 2022
SRR5846852.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846852.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151451
Sequences flagged as poor quality0
Sequence length52
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAAGGAGCTATCTCGTATGCCGTCT10880.7183841638549763RNA PCR Primer, Index 38 (95% over 21bp)
TGTCTCTTATACACATCTCCGAGCCCACGAGACAAGGAGCTATCTCGTATGC9650.6371697776838713No Hit
GCAAATGGGGGAACAAATGTGATCTGACCACAAAGAAAGTAGTAGACTACAC2230.14724234240777545No Hit
CACACGAGGGCAGAAAGGAAAGTATAGAAGAAGGAAACTTGGAGTATCAGAA2000.13205591247334122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)