FastQCFastQC Report
Sat 31 Dec 2022
SRR5846787.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846787.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences287957
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACAAAGGTCCATCTCGTATGCCGTCT14010.48653097511086724RNA PCR Primer, Index 16 (95% over 21bp)
TGTCTCTTATACACATCTCCGAGCCCACGAGACAAAGGTCCATCTCGTATGC13170.45735995304854543No Hit
GTACACGGGCCATTGAAGAAAGTTGATATTGTGTGAGTTTCTCAAAGGAAAT3060.1062658660841723No Hit
ACAACAGGGTTTTGGTCAATTACATGAATTGGGACATATGAGCACAACCTTC2930.1017513031459558No Hit
AACATAGGGGGATGGCGGACCTCCGGAAACCGTAGATTCCGGGCGGTCGGAG2880.10001493278510333No Hit
TGAAAGGGATTTAGCATTGTCTCACACTCAGATTGCATAAAAAATAAGTTTT2880.10001493278510333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)