FastQCFastQC Report
Sat 31 Dec 2022
SRR5846767.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846767.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133691
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCGACATCATCTCGTATGCCGTCT6680.49965966295412556TruSeq Adapter, Index 7 (95% over 21bp)
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGACATCATCTCGTATGC6100.45627603952397694No Hit
CACCACGGGAAAAAATTATGTGAGTAAAATTCAGTTAAGATGACCAGAGGAA1580.11818297417178418No Hit
GCTTGTGGGTCAACAGAGTAAACAGACAACCTATGGAATGGGAGAAAATATT1530.11444300663470242No Hit
AGTATCGGGGGCGGCGAGTGAGGCCCCGGTCTTCCTCCTCGTCCTGCCGCAG1460.10920705208278791No Hit
TCTCCAGGGTAACTACTTGAAGGAACCTCAGCTATGATTTGGTCCAACCTCC1360.10172711700862436No Hit
TGAAATGGGCCTCAGGCAGTTCTTTAGGAAAACTGTCAGCATCATGGGTACT1350.100979123501208No Hit
AAGACGGGGGTCACAAGGAACTCCAGATGTGAATGTTTAAATTTAATTTTTT1350.100979123501208No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)