FastQCFastQC Report
Sat 31 Dec 2022
SRR5846743.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846743.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130407
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTCGACATCATCTCGTATGCCGTCT9840.7545607214336654TruSeq Adapter, Index 7 (95% over 21bp)
TGTCTCTTATACACATCTCCGAGCCCACGAGACTCGACATCATCTCGTATGC9280.7116182413520746No Hit
TGACGCGGACAAAGAGGTTTGCTATATTTAAATTCTTTTTGGAATTTGCAAA1370.10505571019960584No Hit
CAGTAGGGAACGATTTTATGGATATAAGATGGATAGTCTGTGTCTGAGCCAA1320.10122156019232098No Hit
CTTGTAGGGAAGGCAATTCTGCTATGTTTGTTCTTCACTATGATTTACTGTG1310.100454730190864No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)