FastQCFastQC Report
Sat 31 Dec 2022
SRR5846680.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846680.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences178373
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGCTAAATATCTCGTATGC7850.4400890269267209No Hit
CTTATACACATCTCCGAGCCCACGAGACCGCTAAATATCTCGTATGCCGTCT7560.42383096096382294No Hit
ACAATAGGGGGTCCGCAGGGAGACCGAAGGGCACAGCTCCCCGCGCCGCGCA1910.10707898616943148No Hit
ACGCGGGAAAAATTTCCTTTTTATTTTTAGTAGCCCAGGTTGAGTTTTTCAC1860.10427587134824218No Hit
TGAGTGGGACTGTCATGCAAAGTGTATCCTTTCTTGTCGTATCCTTTTTGGG1840.10315462541976644No Hit
TTTGGCGGTTCCCAAATTTGGCAAAACGGACAAACCTACCGAGTCAATAAAC1800.100912133562815No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)