FastQCFastQC Report
Sat 31 Dec 2022
SRR5846671.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846671.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173545
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGCTAAATATCTCGTATGC11350.6540090466449624No Hit
CTTATACACATCTCCGAGCCCACGAGACCGCTAAATATCTCGTATGCCGTCT11330.6528566077962489No Hit
GAAAAAGGGGAGTATCAACAATTTTTTCATGAGTTTATGGACGGGAAGAGAA2170.12503961508542452No Hit
ACTGCTGGGATCAGCTCAGCAGTGACTTTCAATAAGCAAACCACAAAGGAAA1960.11293900717393184No Hit
TGCATTGGGCAGATAAATCCTTAACATTTCTCTCCACCTTAGTACTTTAGAC1960.11293900717393184No Hit
CCAACTACTAGGTCTTGATTGTTCCAATTAATGATATATTTGATCTTTTGGA1940.11178656832521824No Hit
CGTACAGGGGGAGTGGGCGGTGGCGATTGGTGTTGGCGGTCTGGCTCAGCTG1890.10890547120343426No Hit
GTTCTTGGGACCTTTTGGTTGGCTAGATAAGTGGCTGACTACCTGTTTTTCT1870.10775303235472068No Hit
CTTACGGGATCACAAGCATTCCTATACACCAATAATAGACAGAGAGGCAAAT1860.10717681293036388No Hit
CTTACAGGGGACATTTGGCTGTTTCCACTACTTGGCTATTATGAGTAGTGCT1860.10717681293036388No Hit
TTGGAGGGGGAGTTTTGACAAGCGGGGGTTTGAGTTTGGACAAAGTTCAGTT1830.1054481546572935No Hit
CAAGCTGGGGAGGTCTGAGAGACAGAGGCAGCGTGTTTGAGCTGCTGGTGCG1830.1054481546572935No Hit
TATGAGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCCC1810.1042957158085799No Hit
TGTGCAGGGGAAGTCAGTTCTGCTGAAACTGGATTTTGGAATTGGAGAATAT1810.1042957158085799No Hit
GTTTGTGGGCCAACAATTGAATTACATAATGTACAAGTTATTCCTATTTGTT1800.1037194963842231No Hit
GGTTCCAGTCTTCCATTTTGCAGAGGAGGTAAATGAGGGTCAGAGAAATGAA1800.1037194963842231No Hit
GCCGCTGGGGAAAAAGTCTTTAGTTAATGCAGAAAAAATGTATTACTTTAAT1790.1031432769598663No Hit
GTCGCCGGGCAGAGATGATGGATTTGCTTACAATGATACCTGTCTGCAAGCA1780.10256705753550951No Hit
CAGAAGAGGGGGAGAGCAAAGGCTGTCTTTGAAGACCCCAGGGAGGTCTTCA1770.10199083811115273No Hit
CATGCTGGGCTTTGTAAGGTAAGTTCAATATTTGGGATCCCTCAGTGACAGC1770.10199083811115273No Hit
GTGTTAGGGATGGGGCGGAGCCGTTGCCGTCGGAGGATGAGAACTGCACGCT1770.10199083811115273No Hit
GAGTTAGGGAGACAGCCTCAGAGCTGGTGGGGAGACAGCATGCCACTGGAAA1750.10083839926243914No Hit
TTGCTTGGGTATCGTGTGAGCACACCATATATTTACAGTAGGAATAGACGTA1750.10083839926243914No Hit
ATTATGGGGGGAAACAAGACAGTTGAATTGTGTGACTTGAAGATTACCAATG1750.10083839926243914No Hit
GGCATTGGGCTCGCATTGCCCTCTGAAAACCTTCCTCAGTTTCAGATGTACC1740.10026217983808235No Hit
GCCTATGGGATGTTTATAAGTTTGCATAGCTACTTCTCGACATTTGGTTTGT1740.10026217983808235No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)