FastQCFastQC Report
Sat 31 Dec 2022
SRR5846670.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846670.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171851
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGCTAAATATCTCGTATGCCGTCT11330.6592920611459927No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGCTAAATATCTCGTATGC10800.6284513910306021No Hit
CCAACTACTAGGTCTTGATTGTTCCAATTAATGATATATTTGATCTTTTGGA2360.13732826692890934No Hit
TGCATTGGGCAGATAAATCCTTAACATTTCTCTCCACCTTAGTACTTTAGAC2170.12627217764225987No Hit
TTGGAGGGGGAGTTTTGACAAGCGGGGGTTTGAGTTTGGACAAAGTTCAGTT2090.12161698215314429No Hit
GGCAACGGGGACGTCGCGGGGGGCGCCGGCCTCCGCCCGGCCCCGAGGGGCT2010.11696178666402873No Hit
GAAAAAGGGGAGTATCAACAATTTTTTCATGAGTTTATGGACGGGAAGAGAA1970.11463418891947093No Hit
CAAGCTGGGGAGGTCTGAGAGACAGAGGCAGCGTGTTTGAGCTGCTGGTGCG1960.11405228948333149No Hit
ACTGCTGGGATCAGCTCAGCAGTGACTTTCAATAAGCAAACCACAAAGGAAA1960.11405228948333149No Hit
TACAGAGGGGTTTCTGTATGCCAACAATAAACTATCCAAAAAATTAAGAAAA1940.11288849061105259No Hit
ATTTAAGGGTTCTTCAAAAGGTATAAGTTAGTTTGCAAATAATATCTCTTCC1900.11056089286649483No Hit
AATTACGGGGAGAGGAGAATTCTAGTGTACTGCATCTAGTCCTTTCACTCGT1900.11056089286649483No Hit
ACTCCAGGGACCTTTCATTGTGATAGGCAATATTTTCTTTGTATTCCTGACA1890.10997899343035537No Hit
GTTCTTGGGACCTTTTGGTTGGCTAGATAAGTGGCTGACTACCTGTTTTTCT1870.10881519455807648No Hit
GCGTCTGGGCAGGCTAAAATCCCAGGCGCTAAGAGGCACGCTGAGTAAACTG1870.10881519455807648No Hit
GAGACCCTGTCGGAGAGACTATGGGGCCTGACGGAGATGTTTCCGGAGAGGG1870.10881519455807648No Hit
TTAAACGGGAATAGTCAAATTGTAGCTTTTTCACTTGCTGTGTGCGCTTTCA1860.10823329512193702No Hit
TGGTAAGGGAACTTACTACTCCGGAAAAAAAGAACCATTTGGATACATAGGT1860.10823329512193702No Hit
GCATAGTGGGAGACTCACCTCGCAAGAAGGAAGATCTGCCTGGAGACCTGAT1860.10823329512193702No Hit
GAGTTAGGGAGACAGCCTCAGAGCTGGTGGGGAGACAGCATGCCACTGGAAA1840.10706949624965814No Hit
TAGCAGGGGCTGCTCATAGAGTAAAATAAAACATGACTGTTATGCTTTGAAG1840.10706949624965814No Hit
CAGAAGAGGGGGAGAGCAAAGGCTGTCTTTGAAGACCCCAGGGAGGTCTTCA1830.10648759681351869No Hit
ATCGTTGGGTCCAATTGCTGTAGAAGTGCATGCGATTTCTGAGGATTATGAT1810.1053237979412398No Hit
GTCGCCGGGCAGAGATGATGGATTTGCTTACAATGATACCTGTCTGCAAGCA1800.10474189850510035No Hit
TTTTGAGGGTTTTGTTGTCATGAACATTTGATTTCCTTTTGTCATTTTTTTC1790.1041599990689609No Hit
TAACCCGGGAGGCAAGCCGAGAGTCTACAGATGGTAGCATGAACAGCTACAG1790.1041599990689609No Hit
GGCTACATTAAATAACAGATTTTCAATGGAGACTAAACAGCCTTATGTTGGA1790.1041599990689609No Hit
TGTATGGGGAGTCAGATAGCAGTGATATTCACGGTCTATCAATTTATCCATT1780.10357809963282147No Hit
GTAACAGGGCATTCATAAAACAGGAAAAAGTAAACTATCATTCGGAAGCACA1770.10299620019668201No Hit
GCTAAGGGAGGTTTATCTTATATCAGTAAATCAGTTTCTAGCAACAAAGCTG1770.10299620019668201No Hit
CGTACAGGGGGAGTGGGCGGTGGCGATTGGTGTTGGCGGTCTGGCTCAGCTG1770.10299620019668201No Hit
GTTCTGAAACAGTTTCTTTCTGAAACAGAGAAAATGTCCCCTGAAGACAGAG1740.10125050188826366No Hit
TGTGCAGGGGAAGTCAGTTCTGCTGAAACTGGATTTTGGAATTGGAGAATAT1740.10125050188826366No Hit
AATCCAGGGAGGGAATGGATGCTTCACTTGATCTCTGGACCTTGGCTGCAGA1740.10125050188826366No Hit
AGTATAGGGGCAAGATGCTGCAGCACATTGACTATAGAATGAGATGTATCCT1740.10125050188826366No Hit
GTGTTAGGGATGGGGCGGAGCCGTTGCCGTCGGAGGATGAGAACTGCACGCT1720.10008670301598478No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)