FastQCFastQC Report
Sat 31 Dec 2022
SRR5846669.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846669.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences171640
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGCTAAATATCTCGTATGCCGTCT11900.6933115823817292No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGCTAAATATCTCGTATGC10070.5866930785364717No Hit
CAAGCTGGGGAGGTCTGAGAGACAGAGGCAGCGTGTTTGAGCTGCTGGTGCG2240.13050570962479607No Hit
TGCATTGGGCAGATAAATCCTTAACATTTCTCTCCACCTTAGTACTTTAGAC2050.11943602889769285No Hit
CATGCTGGGCTTTGTAAGGTAAGTTCAATATTTGGGATCCCTCAGTGACAGC2050.11943602889769285No Hit
CCAACTACTAGGTCTTGATTGTTCCAATTAATGATATATTTGATCTTTTGGA2010.11710556979725006No Hit
ACTCCAGGGACCTTTCATTGTGATAGGCAATATTTTCTTTGTATTCCTGACA1930.11244465159636449No Hit
TATTATGGGATCTTTTAACCAACTGAACAATACACCAAAAGCAGCCTAGGGA1930.11244465159636449No Hit
TAACCCGGGAGGCAAGCCGAGAGTCTACAGATGGTAGCATGAACAGCTACAG1900.1106968072710324No Hit
TTGGAGGGGGAGTTTTGACAAGCGGGGGTTTGAGTTTGGACAAAGTTCAGTT1880.10953157772081101No Hit
CGATAAGGGCACCTATGAGTGAGAATATGTGGTGTTTGGTTTTTTGTTCTTG1870.10894896294570029No Hit
GCATAGTGGGAGACTCACCTCGCAAGAAGGAAGATCTGCCTGGAGACCTGAT1870.10894896294570029No Hit
ACTGCTGGGATCAGCTCAGCAGTGACTTTCAATAAGCAAACCACAAAGGAAA1850.1077837333954789No Hit
AAATTAGGGAACCCAAGAGTTTCCGGGAAAAGGCAAGGCTTTGTTCCAGGTG1800.10487065951992541No Hit
ATTATGGGGGGAAACAAGACAGTTGAATTGTGTGACTTGAAGATTACCAATG1800.10487065951992541No Hit
TTAAACGGGAATAGTCAAATTGTAGCTTTTTCACTTGCTGTGTGCGCTTTCA1790.10428804474481472No Hit
GATACAGGATGCTCCAAGGATTGAGGTCATGACCATGGGAATAAAGTTATTT1780.10370542996970403No Hit
CTCATTGGGGTGTTTCAGAGGAATTCATAAGCAGAATTGAATTTGTTTTAGT1760.10254020041948264No Hit
TCATAGGGGACTTCCGATGGAGGAACTGACTCACCTGGTACTGCGTCCCCAT1750.10195758564437193No Hit
CTAGAAGGGGGAGGCAGCAAGAGTCACTTTGGGGGACCAATATTCTTAGATA1750.10195758564437193No Hit
GTGTTAGGGATGGGGCGGAGCCGTTGCCGTCGGAGGATGAGAACTGCACGCT1750.10195758564437193No Hit
TACAGAGGGGTTTCTGTATGCCAACAATAAACTATCCAAAAAATTAAGAAAA1730.10079235609415055No Hit
GCGTAAGGGTCTTATAGGAAGTGCTCTAACCACAAAAGGAAAAACAAAACAA1730.10079235609415055No Hit
CTTACAGGGGACATTTGGCTGTTTCCACTACTTGGCTATTATGAGTAGTGCT1720.10020974131903986No Hit
GAAAAAGGGGAGTATCAACAATTTTTTCATGAGTTTATGGACGGGAAGAGAA1720.10020974131903986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)