FastQCFastQC Report
Sat 31 Dec 2022
SRR5846665.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846665.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76888
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGACCTTAATCTCGTATGC28143.6598689002185No Hit
CTTATACACATCTCCGAGCCCACGAGACGGACCTTAATCTCGTATGCCGTCT18552.4126001456664237No Hit
CTTATACACATCTCCGAGCCCACGAGACGGACCTTAATCTCGTATGCCTGTC6190.8050671106024347No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGACCTTA4460.5800645094162938No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGACCTTAA3740.48642180834460513No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGACCTTAAT1690.2198002289043804No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGACCTTAAACTCGTATGC1510.19638955363645824No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACGGACCTTAATCTCGTATGCC1240.16127354073457498No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGACCTTAATCTCGT1070.13916345853709292No Hit
CTTATACACATCTCCGAGCCCACGAGACGGACCTTAATCCTGTCTCTTATAC1010.1313599001144522No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGACCTTAATCCTGTCTCT870.11315159712829051No Hit
TACGTAGGGAGTCTAGGAAGGAATTTGGAAAAAAAATTTCTCATTCATCAGC810.10534803870564978No Hit
GAAACAGGGACCCTGGATGCAGCAGCTTCATCAGCAATGGAAGTGGCTGATA800.10404744563520965No Hit
ATCTGAAGACATCGTCCTGTCTCTTATACACATCTCCGAGCCCACGAGACGG790.10274685256476954No Hit
AATGGTGGTCCGATCTGACGGAGGGCTCTGACATTTTCTCCCAAAACATTAT780.10144625949432941No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)