FastQCFastQC Report
Sat 31 Dec 2022
SRR5846627.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846627.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140674
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGC5560.3952400585751453No Hit
CTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGCCGTCT5550.3945291951604419No Hit
CCCACTTGCGACCCCAATCAGCAGCCTACCCATGCTGCGGCCTCGATGGTTC1760.1251119609878158No Hit
TTTACAGGGGAAAAACAAAGAATTTGAAAGGGAAAAACACGCCCACAGTATA1540.10947296586433883No Hit
CTGTACCGGGTAACTCGGTGAAGACTATTTTATGCAAAGTTTTTTTTTTTTT1430.10165346830260033No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)