FastQCFastQC Report
Sat 31 Dec 2022
SRR5846620.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846620.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences106640
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGC6850.6423480870217555No Hit
CTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGCCGTCT6080.5701425356339085No Hit
AGGGTAGGGAGTTACAGCTGTAGTTTCCTTGTAGTTCGATGCTTGAACTACT1320.12378094523630909No Hit
ATTATTGGGCAACATAGTACTGGAAGTATTAGCAAGAGCAGTTAGACAAAAA1290.12096774193548387No Hit
CTGAGACGGGCAGAGCTTCTGGAATAGAAAAACTCAAGGAATTTTGAAATGC1230.11534133533383345No Hit
TACACAGGGTTTCCAGTGTTTTCTGCATGTTCTCATTTGTTCTTTTTCTCAG1210.11346586646661665No Hit
GCCATTGGGACTTTTCCATGTGATGATTTACTAGTTGTATTTCCTTGTGTGT1180.11065266316579143No Hit
AACTTGGGGACATGCATGTCCTCAGTCTTCCCAGCCACGTCACAAGTGCTCA1150.10783945986496625No Hit
TCACAAGGGGGGCATTCCTGAAGCTGACAGCATTCGGGCCGAGATGTCTCGC1130.10596399099774945No Hit
CTTATACACATCTCCGAGCCCACGAGACCGACTATGACTGTCTCTTATACAC1120.10502625656414104No Hit
GATAACGGGCTTTCTGGTAGAGGATTTCCAGTTTTCATCAGATTTCCAAAGA1110.10408852213053263No Hit
ATAAATGGGGCGTGTTGTCTAAGCTGTCAAGGTATGATGAAGGCACTTTCTT1100.10315078769692423No Hit
GATCAAGGGATGGCCATAACACATGATGTCATCAATAACCTACTGAAATTTA1100.10315078769692423No Hit
TAAGCTGGGCTTCTGACGGGGGGACTACAGGTGCCTGCAAACACGCCCGGCT1090.10221305326331583No Hit
CGGCGAGGGCTGTAAAAGTCTTCTCACCAAGGCTGTGGGAAGGAACGTTTCC1090.10221305326331583No Hit
AGCAACGGGGTGAGATCAGAGACCACAGCAGATCGTGGCGCTGTGATCAGGG1080.10127531882970743No Hit
TGCCTTGGGGGGGGCTATGTGTTTCAATAACATTCACTTGGAATCAGCTGAA1080.10127531882970743No Hit
CCTGATGGGGAAATTTTTCATTTACTTTCAACAGCATAAGATTCTTTAATAT1080.10127531882970743No Hit
CGTTCAGGGACTTGAAATTAAAACAGAAATGTAAAATATTTTATTCACATAA1070.10033758439609902No Hit
ACAAAAGGGGTTAAAATGTAGTCACACCTCTGATATAATCCAACAAGAAGTG1070.10033758439609902No Hit
TGTTAAGGGCTTGCCCTTTATCATATTCATTGCAGTTTTCTTCACAGCGTAT1070.10033758439609902No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)