FastQCFastQC Report
Sat 31 Dec 2022
SRR5846619.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846619.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105906
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGCCGTCT6790.6411345910524427No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGC6360.6005325477310067No Hit
ATTATTGGGCAACATAGTACTGGAAGTATTAGCAAGAGCAGTTAGACAAAAA1360.1284157649236115No Hit
GCCATTGGGACTTTTCCATGTGATGATTTACTAGTTGTATTTCCTTGTGTGT1300.12275036352992275No Hit
TAAGTTCGGGAACCAATATGCTCCTGAATGACCAGTGGGTCAATGATGAAAT1260.11897342926746361No Hit
CGAAATGGGAAAGTTGGGGCTCTGCACTAAAAGCTCCTTCTGCTTTGTTTGA1230.11614072857061923No Hit
TGTTAAGGGCTTGCCCTTTATCATATTCATTGCAGTTTTCTTCACAGCGTAT1210.11425226143938964No Hit
TACCAAGGGGTGTATCAGAAAGCTCTGATACTGCATGGGAGAGAGTTCTTCC1200.11330802787377486No Hit
AGGGTAGGGAGTTACAGCTGTAGTTTCCTTGTAGTTCGATGCTTGAACTACT1180.11141956074254528No Hit
GTGTAAGGGATCAGAACACTGTCACACAAAAAGCTCTTTGAAGAGATTAAAT1170.1104753271769305No Hit
CGCATAGGTCTGGAATAGGGAGTCCTAAAGTAAATCATATATTGAGGACACA1160.1095310936113157No Hit
CTTATACACATCTCCGAGCCCACGAGACCGACTATGACTGTCTCTTATACAC1150.1085868600457009No Hit
TGTCTTGGGGATGATAAGAAGTAACCTTTTTTTTCCATAGCAGTAACCACAA1150.1085868600457009No Hit
AATTCTGGGCCAGTTTTGTGCTGCTCATGATGTAATGTCTACAAACACAGCA1130.10669839291447134No Hit
TAGGCCGGTAGTTAAAAATGTGGATAGATACTGTGAAGCTGCTCGCTCAGAA1120.10575415934885653No Hit
CATTAAGGGACCCTGCTTTTACATTTTAGTTAAGTATTAACTCTCTAGAATA1120.10575415934885653No Hit
GATCAAGGGATGGCCATAACACATGATGTCATCAATAACCTACTGAAATTTA1110.10480992578324173No Hit
ATAGGCAAGGGTGGAGAAATGCTTAGGTCCTATGATAGCTTCGGGACATCTT1090.10292145865201216No Hit
CATAGCGGGGGGTGGCGGCTGTGGCAGCGGGAGCAGCTGCGCCGCCAGCGTG1090.10292145865201216No Hit
TACACAGGGTTTCCAGTGTTTTCTGCATGTTCTCATTTGTTCTTTTTCTCAG1090.10292145865201216No Hit
GGCAATGGGGTAACAAACCTCCATGTGTACCCCCTGATTCTAAAATAAAAGA1080.10197722508639737No Hit
TGTAAAGGGGAGTCGCCTCCTCCTTGGCAAATAGTCCTCGGCAGGGTCCGAG1080.10197722508639737No Hit
TTATATGGGGACTCCACATGAACCTTCACATTTGTTCGCTCATAATCTACTT1070.10103299152078259No Hit
GCTAGGGGGCCCCTTTGCAACCTTAGCTCTCAGTTTTCTTATCTGTGAAATG1060.10008875795516779No Hit
TCTAAAGGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGA1060.10008875795516779No Hit
AACTTGGGGACATGCATGTCCTCAGTCTTCCCAGCCACGTCACAAGTGCTCA1060.10008875795516779No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)