FastQCFastQC Report
Sat 31 Dec 2022
SRR5846618.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846618.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences104936
Sequences flagged as poor quality0
Sequence length52
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGCCGTCT6290.5994129755279408No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGC6150.586071510253869No Hit
CATTAAGGGACCCTGCTTTTACATTTTAGTTAAGTATTAACTCTCTAGAATA1250.1191202256613555No Hit
CTTATACACATCTCCGAGCCCACGAGACCGACTATGACTGTCTCTTATACAC1130.10768468399786538No Hit
CAAATTGGGACTGAAGCAAAATGGGACTCAAGTTAACAATAATAACAACATC1130.10768468399786538No Hit
CTGAGACGGGCAGAGCTTCTGGAATAGAAAAACTCAAGGAATTTTGAAATGC1130.10768468399786538No Hit
ATTATTGGGCAACATAGTACTGGAAGTATTAGCAAGAGCAGTTAGACAAAAA1120.10673172219257453No Hit
GAGCAAGGGGGCAGTTTCCCGGCTCTCCGCGCGGCCGGGGAAGGTCAGCGCC1110.10577876038728369No Hit
TAAGTTCGGGAACCAATATGCTCCTGAATGACCAGTGGGTCAATGATGAAAT1110.10577876038728369No Hit
GCCATTGGGACTTTTCCATGTGATGATTTACTAGTTGTATTTCCTTGTGTGT1110.10577876038728369No Hit
GACTGGGGGATTCAAATTCAGTAAATACAGAGAACACCACAAGATACTCCTC1100.10482579858199284No Hit
CATAGCGGGGGGTGGCGGCTGTGGCAGCGGGAGCAGCTGCGCCGCCAGCGTG1100.10482579858199284No Hit
GTGTAAGGGATCAGAACACTGTCACACAAAAAGCTCTTTGAAGAGATTAAAT1090.10387283677670198No Hit
ATAGGCAAGGGTGGAGAAATGCTTAGGTCCTATGATAGCTTCGGGACATCTT1090.10387283677670198No Hit
TCAGAGGGGTGTGTGACATCATCTGAGATGCACTGGGGGTTGAGGAAAGATG1090.10387283677670198No Hit
ATTCCGGGGAAGGACCGCAGGAAGCTGGGCAGCCGGAATCGGCAATGACCCC1080.10291987497141114No Hit
CGCAAAGGGTTCGGTAAATGTAGTTCTTCAGATTTTTATGTTTAGATTTTTG1060.10101395136082945No Hit
CTGTAAGGGCAGGATATTCTTTTCTCCACCCTAGTTTATTTATTTATAGATA1060.10101395136082945No Hit
CGAAATGGGAAAGTTGGGGCTCTGCACTAAAAGCTCCTTCTGCTTTGTTTGA1050.1000609895555386No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)