FastQCFastQC Report
Sat 31 Dec 2022
SRR5846612.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846612.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8852
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGC400.4518752824220515No Hit
CTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGCCGTCT340.3840939900587438No Hit
TTGCTAGGGAGTTCCAAGTTTCAAAGAAATGTCAACATTTTATTCCATTCAA150.1694532309082693No Hit
CAATATGGGTGAGTTATGAATAGGAGTTGTAAATCACCCCAAAAAAACAAGA140.15815634884771804No Hit
TAAGTCGGGATTTGAGGTCAAATTGAAGACGGAAACCGGAAACCGTTTTCTT140.15815634884771804No Hit
TCGCCTGGGGTGTGTGTGTGTTCAAAAATGTCTATGAAAATGAAAACCCACA140.15815634884771804No Hit
AACCTAGGGATGTTCACATATATGCAAAAGTAGTCTTTATATGTTGGCAATA140.15815634884771804No Hit
TCAGACAGGGATATTTCATAAACATTGCATTAGTAGTCCAAATTCAGAATTT140.15815634884771804No Hit
TTAACAGGGGTGAATTAGTGTTTCTGAATGTTGCTAATTAGCAAGCCTGGGA140.15815634884771804No Hit
AGATGTGGGGAGCACTGAAGTCCTTTAAAAGCCATGTTGCCTGTTTTATGGT140.15815634884771804No Hit
AGGTTAGGGATAAGGAACAATTGGATAAATTTAACCACCTAATAATTTAAAA130.14685946678716674No Hit
GTGCCCGGGCTGACATTCATGGATTGGGTTACCTTATCTTCCTGACCATTGA130.14685946678716674No Hit
CATTTGGGATGTGATTTCTCATGTAAACAGAACTAAAAAGAAAAGCCACACA130.14685946678716674No Hit
AGTTTTGGGGGCTTCACTGAAAGAGCAATCATAGTCTTCTAGACTTTATAAA130.14685946678716674No Hit
ACCAAGGGGAATGGAGATAGTAAAGGGATTTGTGGTCACCAGGGGTTAGGAG130.14685946678716674No Hit
GCAAAGGGACAGCACCTGGTAGGTTACAAGCATTTTGAGCAGATATACAAAA130.14685946678716674No Hit
TCACCTGGGATACTTAAAAATATCTGTAAAGTTTGCTAGTCCGCCTTTAATA130.14685946678716674No Hit
AATCCTGGGGTATTCTTCCATACAACTTGTTTTAACCTTTGAGAACATTGAC130.14685946678716674No Hit
GTGCCCGGGGGGGCTCATGGATTGGCCCCGACCACGACAAGTTCAGTGCCAT120.13556258472661548No Hit
CGAGCTGGGGTTTGTGTTTTTTAAATAACAGCTTTATTGGTACATAATTCAC120.13556258472661548No Hit
CAGCTAGGGATGGCATTGCAAATACTTGTGCCCTTTTTGCTAGCTGGTTTTG120.13556258472661548No Hit
CAGGCAGGGTGGCTTAGAAATGTGCCAGTGTGTTCAAAACATTTACACCAAT120.13556258472661548No Hit
GTGCAGGGACACGATCTTAGGGTGGGAACAACAACCACCCAGAGAAGTGTTA120.13556258472661548No Hit
GTTAAGGGGAGGTGTTATAAGTGATCTTCTAGGATTTAATATAAGACTGTGG110.12426570266606417No Hit
TTGGTAGGGGTACAGAGGCAGATGTATGTCCTGGCAAAGGATGCTCCATGAG110.12426570266606417No Hit
GACTGGGGATAGCCCAGAGAAAGGAAATGACTTTTTCAAGTTTACAGAGTCA110.12426570266606417No Hit
GTGGCGGGCACCTGTAGTCCCAGCTACTCGGGAAGCTGAGGCAGGAGAATGG110.12426570266606417No Hit
GCTTCTGGGTCTGATGAAGGGGTTGTTTGTTAAAGATGTTCCACTGAAAGCA110.12426570266606417No Hit
CCGTTGGGGGACGCTCTTCCGATCTCTAATGGGGAACAGAAAAGACATGGAA110.12426570266606417No Hit
CAATAGGGGTATGGGAAATGTGCAGAGAATTCTGAAGTGTTTCTTCTTAACT110.12426570266606417No Hit
GGAGAGGGGCAATTTCACGTGGATAGCTCTTCATGTCACTCAAAAGATCAAA110.12426570266606417No Hit
TACTAGGGGAAATGAAGATAGTGTGAGCTTTCTTAAGGAAAAATGACCTTAT110.12426570266606417No Hit
GCGAGTTGGGGTTGACAGTGTTGAAGCAGGGTGAATAACTAGGGCATATATT110.12426570266606417No Hit
AAGCTAGGGCACACTAGTGAGCCCACCTTAGACTTCTTTTGGGGCCTTCGAC110.12426570266606417No Hit
TTAGTGGGACGGGCTTTCCATGCAGATACATCAATGGCCAAAGGAAGATAAG110.12426570266606417No Hit
GGTAGTGGGAGACTGGGGCCCAGCCCTTGGCAGCGCACTCTTCAATGGGCTC110.12426570266606417No Hit
GTCCAAGGGGTTCCCCAGAAAGAGGTGTTGAAGTTCCAATCTTCAGTATCTG100.11296882060551287No Hit
TCATCGAGGGAGATTTTAAAAATGGAGGTGAAATAGACATTCTCAGATGAAG100.11296882060551287No Hit
GTACCTGGGATACAAAAAATAACTCCAGATGGATTAAAGGATTCAATGCAAG100.11296882060551287No Hit
AGCACTGGGATCCGAACCTAGTGAATGGTATGCTTGGGTGTTTTCCATTGAG100.11296882060551287No Hit
TCGCGCGGGCAAGAAACCTTGGGCCACCGCTTTGTACATAGCACCGTGCTAG100.11296882060551287No Hit
TCCAAGGGGGATCTTCGTGAGGGAGAGGAGTACAGACTAGGTTCCAGTTTTC100.11296882060551287No Hit
TCTGCAGGGGAGGATGGTTTCAATAAACCTAATAATCTGAAGTTCAGTATCA100.11296882060551287No Hit
ATGCTGGGGACCACACTTGGGGTTTAAATATCCAGGTGTGCCCCTCCAAGTC100.11296882060551287No Hit
GCAGTGGGGAAGGCTAGGAGCCGAATGTGCCCCATTGTCAGTGGGTCCACGT100.11296882060551287No Hit
ACAGGAGGGGATGATCAGCATTTAGAGTGAAAACAAGGGCCCTTCATGGGTG100.11296882060551287No Hit
GCTTGCGGGCTTAAAAATATGTACAAATACGAGTTGTAACTGAGGGCTGCAG100.11296882060551287No Hit
ACTATAGGGCTATGTCACTCATCATGAAATCCTCAGTCCTCTCAATGGCTTA100.11296882060551287No Hit
ATTAATGGGTCCGATCTTCCATGGGGATTATGTAGCAGTTTTGTTTACTTTT100.11296882060551287No Hit
ACTATTGGGCACTACTGGGCGTCTTTGCAATAAGAAACTGTGGTTGGAAATA100.11296882060551287No Hit
CTCAGGGGGTAAAGAAATAGGAAACAATGTAACAAATGTTAAGTACAGAAAT100.11296882060551287No Hit
CTTAGTGGGATGCTTTATACTGCCGAGTCTGGGGGCTTGTTTTGGTTTGGGG100.11296882060551287No Hit
TCATCCGGGGTGTCTGTGACTTTTGTGAAAGGGAGAAGTGACATTGCATCAA100.11296882060551287No Hit
TACGCCGGGGCCACCGCACCTGGCTAATTTTTTGTGTTTTTAGTGGAGATGG100.11296882060551287No Hit
ACAGAGGGGGACGCTTTTCCGATCTTTTACCTGGGACATGTTTAATATGTGC100.11296882060551287No Hit
GTTTACGGGCATCACGGGAAGTTTGGACCTTCTTGGATTAGAAAAACTGGAC100.11296882060551287No Hit
CACAGGGGTAGAAAGACAAGCCACGCTGAGGAAAGATTCTTGCAGTGCACAG100.11296882060551287No Hit
CGTTCCGGGGCGCATGCAAGAGACCCTTTATTGGCCTTACAGTGGGCCATTC100.11296882060551287No Hit
AGAAGCGGGCTACCCCCTGAGGTTCTGCTGAATTGGTTATAAAGCTCCGGAA100.11296882060551287No Hit
GCGCGGGTGAAGGGCTGGAATGCTGGCTGGCCACTCTCTGCCTCAGTGGCCT100.11296882060551287No Hit
CTACACGGGCCCCGGAAGTTTTGCTGCTAGTCGCGGACGCAATGGCTTCAAG100.11296882060551287No Hit
GTCTTAGGGTCTACAAATGCAAGTAAAATTTCCTGTAACAGCATTTCTCCTG90.1016719385449616No Hit
GGTTATGGGGGAGGCGAATTAGTCCGAGTGGAGAGAGCGAGCTGAGTGGTTG90.1016719385449616No Hit
TGTGTCGGGGAGTTTCCTTCAAGATAAAATAATGAATAATTCTAAGAACAAG90.1016719385449616No Hit
GGCGTAGGGTCTACACGTGGGGCCGCCATCTTGGTTCCGCGTTCCCTGCACA90.1016719385449616No Hit
TTAGCAGGGGACCAAACCATTTGTATCTGGCATCACTTACTAACACACGACA90.1016719385449616No Hit
AAAGCGGGGAGAGCAGCCCCACAGAGGCCTACAATCTGTTGTTTGTCCTTGC90.1016719385449616No Hit
GGTAACGGGTTTCTTACCAGTATAATTTTCATTTGGAAAACCTTCCCTCCTC90.1016719385449616No Hit
TGTGACGGGATTGTCAATTAGGCATTTGGATGTAGGCATTTGGGAATTTAGA90.1016719385449616No Hit
CATTGCGGGAAGGCAGCGGTGCTTAATCAATATTTCCTGTGCTCACCAGAGG90.1016719385449616No Hit
ACAGGGGGTGGTCAAAGTGCTGCTCGACTGCGGGGCCGACCCGGACAGCAGG90.1016719385449616No Hit
CGTACTGGGGATCTATATTGGGGTTAGTTCCTTATTCTCATTTATCTTTTAT90.1016719385449616No Hit
GTTGGAGGGATTGATTTAAATATTTTATTTCATATTCTAGAAATGGAGAGAA90.1016719385449616No Hit
ACATTTGGGAGTGGTCATGGTGTTGTCATCTCAGAGCCTTCAAAAGGTTTCA90.1016719385449616No Hit
TTTATGGGGGAATGAAAGAATAAATGCGTGCATTCCATAGGATGCAAGAAAA90.1016719385449616No Hit
TTGCACAGGGTCTGGTAGGGTAACTAAACAACAATTTTCTCTTCATTTCATA90.1016719385449616No Hit
AATGCGGGGTGGACTACAGATTGGGAATGGATGTGGGTTACAAGTTGGGAAC90.1016719385449616No Hit
ATCGCAGTGGGCTTTTGCGGGTGGCGGCGAACGCGGAGAGCACGCCATGAAG90.1016719385449616No Hit
CGCGCCGGGAACCAATTAGAATTGATACCAGTGAAATTTTTATATTGCTTAC90.1016719385449616No Hit
TACGAGGGGATGGATAAAATCTTGCCAAGCTTTATTTTTGATAGGTATGCTA90.1016719385449616No Hit
CTTATACACATCTCCGAGCCCACGAGACCGACTATGACTGTCTCTTATACAC90.1016719385449616No Hit
CATACTGGGACAATTTTATAGCTGAATGGAGAAAGCTGAGGTGGTTTCTAAG90.1016719385449616No Hit
CTACATGGGATCTCGGCTTGGGTCAGCTGACAAACTTGTGGGTGAGAATAAA90.1016719385449616No Hit
TGTGACGGGAAATGGGCAGGTCTGGAATGGGGCACCTTCGGCCGTTCAGAAG90.1016719385449616No Hit
GTCCCTGGGGTACTGTGTTCATTGTCCAGTCTCCAAAGTCCATTCCTGACCT90.1016719385449616No Hit
TCTCTCGGGATGTCAATATTTAGTTAGTTTATTTTTAAAATATTCACAAATT90.1016719385449616No Hit
TCAGCCGGGGGGGCCAGCGAGGCAAGATGGAGTTAGTGCAGGTCCTGAAACG90.1016719385449616No Hit
GCTCTGGGGACAAGATATGTTTCTGAAAACCTGTAGTTTCTTAATTTAAGTC90.1016719385449616No Hit
TGATCTGGGATGGCACATGCAGCGCAAGTAGGTCTACAAGACGCTACTTCCC90.1016719385449616No Hit
TGTCCGAGGGGGGTTTTACAAGAGGTGAATGAGACAAGCACAAAGAACATGG90.1016719385449616No Hit
AGCCTGGGTGACAGAGTGAGACCCTGTCTCAAAAACAACAAAAATCTCAGTG90.1016719385449616No Hit
CCCGCCAGGTCCCTCCTCCAACACTGGGATTACAGTTTGACATGAGATTTGG90.1016719385449616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)