FastQCFastQC Report
Sat 31 Dec 2022
SRR5846611.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846611.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134052
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGCCGTCT6830.5095037746546117No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGC6200.4625070868021365No Hit
GTATCTGGGAAAGTATTTTCTTTACCCATAGAGGAATGAAGCTAGAAATCAA1540.1148807925282726No Hit
ATCTAAGGGCTGAATCGTAACTGCACTGCTTTCTGGACCATTTCTAAGGCGG1510.11264285501148807No Hit
AAAAAAGGGAAATGAACACTTGTTGAAAGAATCTACTTGCAAGGAGTGAAGA1510.11264285501148807No Hit
TGCTACGGGGCCAGGGCAGGCGGGCGGCTGGCAGCTGTGGCGCCGACATGGC1440.1074210008056575No Hit
CGTGACGGGTAAGCATTTTGTCCCTATTTCTCAATACTTAGACCATCTACTT1440.1074210008056575No Hit
CCATCAGGAAAACAAGCCTGGTTCAGTTAAACCTACTCAAACTATTGCTGTT1420.10592904246113448No Hit
CAGCCTCCCAAAGTTCTGGGATTGCAGGCGTGAGCCACCATGCCCGGCCGTG1410.10518306328887299No Hit
TGATCAGGGGCCTTAATGAGTATTTGCTTTAAATTTCTAAGAATTTATATCA1390.10369110494434997No Hit
GCTTCAGGGATATAGACTAACATGGATCTAACTTTTTGACTATCTTCCTCTT1370.10219914659982693No Hit
GGAACGGGATCTGATGAATAGTAGTCATACTTCTCTTTATTGTTGCAGTCTT1370.10219914659982693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)