FastQCFastQC Report
Sat 31 Dec 2022
SRR5846610.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846610.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences133990
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGCCGTCT7170.5351145607881186No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGC6020.4492872602433018No Hit
CGTGACGGGTAAGCATTTTGTCCCTATTTCTCAATACTTAGACCATCTACTT1520.11344130158967088No Hit
CCTTTTGGGAGTCTCAAAGAGGTTAAGTAACTTGCTTGTGATGTAGTTATGC1460.10896335547428912No Hit
ATATAGGGGCAATTTCCAATCTTTAGATTTGAGGAAAATAACGTTCATAGTT1450.1082170311217255No Hit
AAAAAAGGGAAATGAACACTTGTTGAAAGAATCTACTTGCAAGGAGTGAAGA1400.10448540935890738No Hit
TATCATGGGATGCTAAGAAAGGAGATAAAATGGAATCATGTAACATGATCAA1380.10299276065378013No Hit
CATAGGGATGACTGAGATTTATTTCTCTCTTTTAGATGAAATTGTTGATACT1360.1015001119486529No Hit
CTAGCAGGGGACCATCAATGAGGATTGACCATGAATTGACAGAAATTAATGG1340.10000746324352563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)