FastQCFastQC Report
Sat 31 Dec 2022
SRR5846609.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846609.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences131642
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGCCGTCT6700.5089561082329348No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCGACTATGATCTCGTATGC5920.44970450160283193No Hit
ATATAGGGGCAATTTCCAATCTTTAGATTTGAGGAAAATAACGTTCATAGTT1560.11850321326020571No Hit
ACGTTTGGGACGATAAAAATTTTTATACAGAACCTACTGCCTCAAACTGAAT1420.10786830950608467No Hit
AAAAAAGGGAAATGAACACTTGTTGAAAGAATCTACTTGCAAGGAGTGAAGA1390.10558940155877303No Hit
CGAACAGGGGAGACTGGTTTCCTTAAGAAAGTGACAACTTGGTGAAGATGAT1350.10255085762902418No Hit
GTTTGCGGGGAGGAAGAAAAAACAATATTCCTGGAGAGTTTAGTTATGGATA1340.10179122164658695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)