FastQCFastQC Report
Sat 31 Dec 2022
SRR5846587.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846587.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155447
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGC46993.022895263337343No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGCCGTCT45262.9116033117396927No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCT8890.5718991038746325No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTA6100.39241670794547334No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCCTGTCTCTTATAC3300.2122910059377151No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTAT2740.17626586553616347No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCCTGTCTCT2690.17304933514316775No Hit
ATCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGT2360.15182023454939625No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGCC2200.14152733729181008No Hit
AAGCCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTC1800.1157950941478446No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTAACTCGTATGC1790.11515178806924546No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGT1650.10614550296885755No Hit
TAGCCCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTC1570.10099905434006447No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)