FastQCFastQC Report
Sat 31 Dec 2022
SRR5846578.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846578.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451688
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGCCGTCT85111.884265245036397No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGC81851.8120915322080728No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCT11970.2650059332990914No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTA8450.1870760347850729No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCCTGTCTCTTATAC6780.1501036113423425No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCCTGTCTCT5150.11401675492818053No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGCC4760.10538247639963869No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)