FastQCFastQC Report
Sat 31 Dec 2022
SRR5846577.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846577.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452864
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGCCGTCT83931.8533157857546636No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGC81361.7965658564160543No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCT12260.27072145279819104No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTA9050.1998392453363482No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCCTGTCTCTTATAC6320.13955624646693046No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCCTGTCTCT5280.11659129451667609No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGCC4760.10510881854154888No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)