FastQCFastQC Report
Sat 31 Dec 2022
SRR5846576.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846576.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449438
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGCCGTCT83591.8598783369452518No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGC78191.7397282828777272No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCT12650.281462626658182No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTA9240.20559009251554164No Hit
CTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCCTGTCTCTTATAC6300.1401750630787784No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCTCGTATGCC5200.11570005206502343No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTTTACCTATCCTGTCTCT4650.10346254655814593No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)