FastQCFastQC Report
Sat 31 Dec 2022
SRR5846536.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846536.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69569
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCACTTCCGATCTCGTATGCCGTCT7181.032068881254582No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACTTCCGATCTCGTATGC6760.9716971639667094No Hit
CTTATACACATCTCCGAGCCCACGAGACCACTTCCGACTGTCTCTTATACAC2010.28892178987767536No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACCACTTCCGATCTCGTATGCC1550.22280038522905316No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACTTCCG1380.1983642139458667No Hit
CTCTGCAGGGGGTTTATTGCTCCTTAATGAGGTACAGACTGTGCTGCATTCA1200.17249062082249278No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCACTTCCGACTGTCTCTTA1160.166740933461743No Hit
ATGTAAGGGCACTGCAAATGACAATAACATCTTATGTAATGAAATAGTTAAA900.12936796561686958No Hit
AACTGTGGGTGAAACAGATGTTGCTGGTAACACAACAGAGGACAAAAACATG890.12793054377668214No Hit
ATCTAAGGGTACACCAGAGGTGGCCGAATCATCTCCACTTCTTCGCGTTCGG880.1264931219364947No Hit
TGATATGGGTATGTACAGTTGACCTGTTTAGAAGTTGTATTGCCATTTAGTT840.12074343457574495No Hit
CAATGGGGTGTGAATTAATTTCCTCAAATGCTCAGTTGCCTGAAGATGAATT840.12074343457574495No Hit
AAATTTAGGGAGTGGGGGATACATATTTACATAGTCACATAACTATAGCTAC830.11930601273555749No Hit
GACACTGGGGAAGTCACATCAGAAGGTTTGCAATCCCACAGAGAAACCCAAA830.11930601273555749No Hit
ACAACGGGACCTACAGACAACCTAAGGCAGTATCCTTTTCCCACCGATCTTT790.11355632537480775No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCACTTCCGA780.1121189035346203No Hit
AGGACTGGGACAACAAACAAACAAAACCCCCAAAAAAACAAAACTTAGTTGA770.11068148169443286No Hit
TTTGTTGGGACTTTTCCTTTGCTGTTGATGTTTATCCATGCATCGTTGAGAC760.10924405985424541No Hit
CCCGTGGGGAAGAGGTTTGTAGTCTCAAATGAGTAGGTTTTTCCTCTAGAGA750.107806638014058No Hit
CGGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCACTTCCGATCTCGT740.10636921617387055No Hit
GCTTATGGGCATCAAGAAATAGGTTATAGGTAAAATCTCTGAAGGATCATCT730.1049317943336831No Hit
TAGCTAGGGGTTGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAAG730.1049317943336831No Hit
GCTACGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCAG720.10349437249349566No Hit
GGGCTGGGGGTAACTATGTGAGATGATAGCTACAGTAATCTATTTCACTATG720.10349437249349566No Hit
GCCTTGGGGTGAAGTGACCTCTGCAAGGCCACACCACTGGAAAATGACAGAG710.10205695065330822No Hit
TGTGTGGGAGTACAAAGACCAATGACACTATGAAGAAACTGCATCAACTAGT710.10205695065330822No Hit
GTTAGGGGGATGAAATCCAAGTAATACTACCTAATTGTTACTGTGGAGATTA700.10061952881312078No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACG700.10061952881312078No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)