FastQCFastQC Report
Sat 31 Dec 2022
SRR5846484.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846484.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132557
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGCCGTCT8730.6585846088852343No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGC5660.4269861267228438No Hit
CACCAAGGACGCTCCATTATGGATGGTAGAAATGCACTAAGAATTAGTGAAA2500.18859811251009No Hit
TAAACCCGGGTCTCAGTCTGTGGAGAGAACAAAACCCAAGGCAAAGATAGCA1890.14258017305762805No Hit
AATTTGGGGCTCTTTTTAAAAAACTCTTTGGTGCACAAGTAACACATTTGGC1730.13050989385698228No Hit
GTGTGCGGGGAGAACCCTGAGGAAGTTTACTGTCATGAGTCTCGGCTGGTTG1630.12296596935657868No Hit
CGATATGGGCGATCTTGCAAGGGAAGCATTAGGACTGATACAAATAATATAT1610.12145718445649796No Hit
TTGCAGGGGAGGGATGCAAGACTGGTTCAATACTCAAAAATCAATGTAATAT1610.12145718445649796No Hit
AATGCCTGGGATAGATCAGAATTTTAAATTAAAGGTTTTTTCTTTAAATGAT1600.1207027920064576No Hit
AATTCCGGGGACATTATATCTTAGATGTGTAATTTATGAACTACTACTGGAT1590.11994839955641724No Hit
TCCTAAGGGGATAAGAGTGATGCTGTCTCACACACAGGAAACTACACTTGTG1590.11994839955641724No Hit
GTCTTTGGGGTAGACTATTGAAGAATGATCTCTTTGTGATTTAAGAAGTGGC1590.11994839955641724No Hit
CTTGTCGGGGGGGGGACAGGCGCGCCCGCGCCGCCCGCTCCAGCTGGGCTAG1550.1169308297562558No Hit
TAAGTAGGGACAAACACATATGCACGCATTTTGTGCTTCTTCAAAGGGTGCC1520.11466765240613472No Hit
TAAAAAGGGAATGGAAATCATAACAAACAATCTCTCAGACCACAGTGCAATC1520.11466765240613472No Hit
TTTTCAGGGTGGGAGGGGGATGTTGGGAGGCATGGGGGGTGATTAAATTATC1510.11391325995609436No Hit
GCAATGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1500.113158867506054No Hit
GCATGAGGGCTGAGTAGCAATAACTTAAACTTGAGCACAAGGTGTGCACCAA1470.11089569015593292No Hit
TACACAGGGATTTCTGGTGGATTGTGCAGACCACGAAAGGCTGTTAGAGTCA1460.11014129770589257No Hit
AGCAATGGGCCGCAAGATGGAGTACAAGGGCAGCAGCTGGCATGAGACCTGC1460.11014129770589257No Hit
TTTCGAGGGGAGAATGATAGAAGTACTAAAATCTGTCAAGTGTTTTCAGTAT1450.1093869052558522No Hit
GCAATAGGGTCAGTATTGTGCTGAAAGAAACATTGATGTGAACCCAGTGATC1450.1093869052558522No Hit
GGGCACGGGCAGGTTGAGTTTGATGTTCCTGTTGGTTCTCGAGGGGACTGCT1440.10863251280581183No Hit
GCGAGGGGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCAT1430.10787812035577148No Hit
GTATTGGGGACACACAGTATATTAAACGAAAACGTAAATAAGGTATAAATAG1430.10787812035577148No Hit
CCTTCAGGGCAAGTAACACATTTGGCCACAAAACACCAAAGAATTGTAGGCA1400.1056149430056504No Hit
TTGTCAGGGATTGATGCATGCATTGAAGAAGATGGAAAACTCTACCTTTGTG1390.10486055055561004No Hit
ACTAAGGGATATTTTGTATGGCCAACATCTTTATTATAATTTTTTACCGTTT1390.10486055055561004No Hit
TTGTGAGGGCTCTTTTTCCGGCTGGAACCATGGAGGGTGTAGAAGAGAAGAA1380.10410615810556968No Hit
TGTCCGGGGGTGTGACAATCAGGATATAGAAAAACAAACGTAGTGTTGGGAT1370.10335176565552932No Hit
TCGTTCAGGGATTTTACTACAGTTTATCCATCCCCTATGAAACAGAAGTATT1370.10335176565552932No Hit
AAATGTAGGGTCCCATGAAGCTGAGGTCTTGAAGCAGCTGGCTGAGAAACGA1360.10259737320548896No Hit
CTCGGGGGAATAAAATCAAATATAAATGTTTGAGTCTTAGGTTAAAAAGGAA1360.10259737320548896No Hit
CCTGATGGGCAGGGTTCAAGCGAGTCTCATGCCGCAGCCTCCCAGGTAGCTG1360.10259737320548896No Hit
CACGCTGGGAGCACTTGACATCTAGTCAGCTCTCTACTCCTTTATTTTGTTT1350.10184298075544859No Hit
CGGTTAGGGGAAGAGATGCCACCATCAGTTGGATATATAAAAGAAATAGCCA1350.10184298075544859No Hit
ATGTTCGGGATCTCAGGCGGCAGTGAAGTCCAGATAGTTTTGCAGATTGTTT1350.10184298075544859No Hit
TGGTCTGGGGAAAGGGTGGCTGGTAGTAGCCATGGTGGTATGGTTAGGCAGT1350.10184298075544859No Hit
GTAAACGGGGATGGAAACATGCTTACTTTTTTGTCAGCTTTTAAAATTTTAC1340.10108858830540823No Hit
TAACCAGGGATTGCAATAAACACTGGGACCAGTTCCGGGGTTAAGAATTAAT1340.10108858830540823No Hit
CACAGGGCTTCCCTCTCTCGGGGTTGGCTTCTTCCCAGGCCTTGCATGGGCC1340.10108858830540823No Hit
TTCTTAGGGATCTCCAGAGAGGACATGCAGATAGCCAGTGAGCACAGGAAAA1330.10033419585536787No Hit
CCGCATCCACTTCCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAA1330.10033419585536787No Hit
GTACCAGGGCAAGTGGACATGTGTGTATTTACTAAACTCTGTGGACCTGGAA1330.10033419585536787No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)