FastQCFastQC Report
Sat 31 Dec 2022
SRR5846478.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846478.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83217
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGCCGTCT11061.329055361284353No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGC8250.9913839720249469No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTACATCA1350.16222646814953676No Hit
CTTATACACATCTCCGAGCCCACGAGACCTACATCAATCCTGTCTCTTATAC1240.14900801518920412No Hit
TGTGTTGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA1120.1345878846870231No Hit
TACGAGGGAAACCAGACTATTTTAGAAACAAAAATAATGTTGAATTCATTAA1110.13338620714517466No Hit
CATAAAAGGGCATGTGGTAGTGACTGGTGTCCCCTCTGTAATCTACCCTAGC1110.13338620714517466No Hit
CAGCTGGGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1080.1297811745196294No Hit
CCACCCGGGTGCTGTTCTCAGCTCCAGCTTCAAACCTCGAGTCTCGAGAGGG1000.12016775418484205No Hit
TCTCAAGGGCTTTTGGACAGTAATTTCTATCACAGTTAGAAGGAAATGATAG970.11656272155929678No Hit
ACTCTAGGGAGTCTTCTGTTCGAGTGAGCCTGGGAGTAAACACTCCTGCTCG960.11536104401744837No Hit
GCGTGGTGCTTCTTTAGTAAATACTGTACAGATTTTACCATGGAGAACTTTT940.11295768893375151No Hit
AAGCCAGGGGGGCCGGCGCTGGGGTAAGAAGCCTGCTGAGGGATGCCCAAGA910.10935265630820626No Hit
TGCTATGGGATTGACCGTCTTTTCCAGACCTCTTTAAGTCACACTCTTAACT890.10694930122450942No Hit
TATGGCGGGGATAGCTTGCTTTATTTCTGCCTTTACGTTGACAGTGTTGAAG880.10574762368266098No Hit
TGATTTCGGGACCTGATAGGAATTTTGAGAAAGAAGATCTAATAACAGTTAC880.10574762368266098No Hit
TTACTTGGGAGGCTGAGGTGGGGGGTCACACATACTTTTTGTTGTTACTGCT860.10334426859896415No Hit
ACGTGCGGGGCATTTTATGGTACTTCTTTCAAATTAACTGTCCAAGCCAGGA840.10094091351526731No Hit
GCAAATGGGAGGAAGAAGAAAAGAAAGGAGGAGGAGAAGAGGAAAGAAGGAG840.10094091351526731No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)