FastQCFastQC Report
Sat 31 Dec 2022
SRR5846435.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846435.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142305
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGCCGTCT9080.6380661255753487No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGC7090.4982256421067426No Hit
TTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAATCCATGACG2490.17497628333509013No Hit
CTTGACGGGAAGATTTTAAGAGAAAATATGAAGACTTAGAAGAGTAGCATGA1590.11173184357541899No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)