FastQCFastQC Report
Sat 31 Dec 2022
SRR5846429.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846429.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences181398
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGCCGTCT15260.8412441151501119No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGC13630.7513864540954145No Hit
GTCACTGGGAGTTGTAGAATAAGTACAACTGTTGGTCACAGAAGTCTGAAGA3450.19018952799920616No Hit
CATGTTGGGGTATATGAACAGATGTTCAACATCATTTATCAGGAAAATGTAA1910.10529333289231414No Hit
TTGCAAGGGCCGATCAAAAGGGGGGGGTAGCACACTGGCCGGTTCACGCGGG1850.10198568892711055No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)