FastQCFastQC Report
Sat 31 Dec 2022
SRR5846427.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846427.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences173305
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGCCGTCT11850.6837656155333083No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGC11830.6826115807391593No Hit
ATGTTCGGGTGAGGCAAAAACACAACACACCAAAACTTATGAATTGCAGCAA2390.1379071579008107No Hit
TTAATTGGGTATTAAAAAAGTGTGTTCCAAAGGCATTAAAATTATATATGTT2110.1217506707827241No Hit
CTCAAAGGGAATATGATGCAGCCACTATGGAAAACAGTATGGGGTTTTCTCA1980.11424944462075531No Hit
TTGAGCGGGCAAGATGGCGGTGTGTGTCCAAGATGGTGGTGCTTTTCCAAGA1970.11367242722368079No Hit
TACTATGGGACCGAGGCACATGACCTTGACATTTTAAAACTGATTTGAAAAG1960.11309540982660628No Hit
TTAGCAGGGATTGTCTCTCTTTGCAGATGACATGATTATATGTTTAGAAAAC1910.11021032284123367No Hit
CATGGTGGGTATCCTTCCACAGAATACATCAGAGCTATCAGTGCTTTGTACA1870.10790225325293556No Hit
GGCATCGGGATGTAGACTAGAACTTCAAGCTTGGAATTCTGCTAAGTCTTCT1840.106171201061712No Hit
AGTCTAGGGACAGGTATGGAAGCACTTCAAGTATAGTCATGGAAACCCACAA1820.10501716626756295No Hit
GATGGAGGGATACCAGTTTTTGCATGAAAGGGCAGCAGCCGGCTGAACTAGA1790.10328611407633939No Hit
TCTTACGGGGAGATAAGATTTGCATGGGGACACAGAGCCAAATCTTATCATA1790.10328611407633939No Hit
AGTATAGGGATGCCCAGGTGGGTGCTCTGGGCTGGAGCGAGGGCCAGGTTTT1780.10270909667926488No Hit
TAGTATGGGCAGACACTGACAAACATTTACAAGCATCAAGACCATCCAGGAA1770.10213207928219037No Hit
TCTACTGGGGCCAGTTGGGTGACCATGTGCCCAGCTTCCATTTGGTAGTTTT1770.10213207928219037No Hit
TATGGGACACTAGGAACATTCTGCACGCTAGGCCATGAAACCTCAATAGATT1760.10155506188511583No Hit
AAGCTTGGGTACTCAATTTGACATCAGTATTTGAATTCTTCTATCACCAGGA1750.10097804448804132No Hit
TGGCCCGGGAACCCATCCTTCTGACGTAATTCAGTGGAAATGTACAACATAC1750.10097804448804132No Hit
GAACAAGGGATTATTCAAGGTAGTTATGTTCTATAAAGTCACTGCGAACACT1750.10097804448804132No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)