FastQCFastQC Report
Sat 31 Dec 2022
SRR5846426.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846426.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174173
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGCCGTCT12370.7102134085076331No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTACATCAATCTCGTATGC11100.6372973997117808No Hit
ATGTTCGGGTGAGGCAAAAACACAACACACCAAAACTTATGAATTGCAGCAA2290.13147847255315118No Hit
TTGAGCGGGCAAGATGGCGGTGTGTGTCCAAGATGGTGGTGCTTTTCCAAGA2260.12975604714852473No Hit
GATGGAGGGATACCAGTTTTTGCATGAAAGGGCAGCAGCCGGCTGAACTAGA2190.1257370545377297No Hit
CTCAAAGGGAATATGATGCAGCCACTATGGAAAACAGTATGGGGTTTTCTCA2100.12056977832385042No Hit
CATGGTGGGTATCCTTCCACAGAATACATCAGAGCTATCAGTGCTTTGTACA2010.1154025021099711No Hit
AGTCTAGGGACAGGTATGGAAGCACTTCAAGTATAGTCATGGAAACCCACAA2000.11482836030842897No Hit
ATCCCTGGGCATTAAGCATTTCGCCAATCAGAATCTCATTTTATAGTTTTTC1910.10966108409454967No Hit
GAACCTGGGTCTGGATGAAGTAATTTTACTAATTTATTCCATGCAAAATATT1840.10564209148375467No Hit
ACTTAGGGGATCTGAGTGCTAGTTCTGCCATTACTATTAGATATCTGCTAGA1830.10506794968221252No Hit
TTTGCTGGGAGCCCAGTATTGCCTTAAATAAAATCACATTTCATTTCTTGTT1800.10334552427758607No Hit
TACTATGGGACCGAGGCACATGACCTTGACATTTTAAAACTGATTTGAAAAG1780.1021972406745018No Hit
GCATTTGGGATGTTCATGAATGGGTGAGTGAATAAACAAACTATGGCATAGC1780.1021972406745018No Hit
GTTTAGGGGATCAAGACTGAGAAAAAGCACACCAGCTATTGGCACAGCGTGG1760.10104895707141749No Hit
ACATGAGGGCAGGGAAAAGACCCAGTGCTCTTCCCCACTCTCCTGGTTTTCC1750.10047481526987535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)