FastQCFastQC Report
Sat 31 Dec 2022
SRR5846421.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846421.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11444
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGC1010.88255854596295No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGCCGTCT840.7340090877315625No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGT230.20097867878364206No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTAT130.11359664452988466No Hit
TGGTTCGGGAATGAAGAAGTTCAACAGCAGATTTGAGAAGTAAGAGATCAGA120.10485844110450893No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)