FastQCFastQC Report
Sat 31 Dec 2022
SRR5846397.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846397.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences292121
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGC22730.7781022247630263No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGCCGTCT22170.7589320863614736No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGT3150.1078320285087344No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)