FastQCFastQC Report
Sat 31 Dec 2022
SRR5846395.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846395.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences245580
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGC34021.385291961886147No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGCCGTCT29081.1841355159214921No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGT4450.1812036810815213No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTA3040.12378858213209544No Hit
TTTGACCGGGCTCTTGAGTGTATACCTAGCTGTACACTGAGCAACTGCTGGG2570.10465021581562016No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGCTGTCTCTTA2520.10261421939897386No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)