FastQCFastQC Report
Sat 31 Dec 2022
SRR5846394.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846394.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences244847
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGC34271.3996495770828314No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGCCGTCT28931.1815541950687574No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGT4550.18583033486217923No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTA3510.14335482975082398No Hit
TTTGACCGGGCTCTTGAGTGTATACCTAGCTGTACACTGAGCAACTGCTGGG2530.10332983454973922No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)