FastQCFastQC Report
Sat 31 Dec 2022
SRR5846382.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846382.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences227920
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGCCGTCT28361.2442962442962442No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGC27601.2109512109512108No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGT5040.22113022113022116No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTA3460.1518076518076518No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGCTGTCTCTTA2780.12197262197262199No Hit
TATTTAGGGTGTGATGCTTACTTTTTTATTAGCCACTTCATTGTTGATGTCT2670.11714636714636716No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGCTGTC2380.10442260442260441No Hit
CTACAGGGAAGTTTTAAATTTTACGTAAATGATGTTCTGCTTGGCGTAGATG2300.10091260091260092No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)