FastQCFastQC Report
Sat 31 Dec 2022
SRR5846381.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846381.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences228731
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGC28241.2346380682985691No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGCCGTCT27261.1917929795261684No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGT4800.2098534960280854No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTA3480.1521437846203619No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGCTGTC2850.1246005132666757No Hit
TATTTAGGGTGTGATGCTTACTTTTTTATTAGCCACTTCATTGTTGATGTCT2700.11804259151579803No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGCTGTCTCTTA2660.11629381238223066No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)