FastQCFastQC Report
Sat 31 Dec 2022
SRR5846367.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846367.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences189863
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGC31081.6369698150771872No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGCCGTCT29341.5453247868199702No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGT5810.30601012308875347No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTA4430.2333261351606158No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGCTGTCTCTTA2290.12061328431553278No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGCTGTC2280.12008658875083612No Hit
ACTCAAGGGAGATGCAATTATTGAGCATTTAATAGGTACCTTATTAATCTCA2040.10744589519811652No Hit
CAAAACGGGACATTTGGTTAAAATGAAAATCTCTGCTTAATGGAAAAAATAC2030.10691919963341989No Hit
GTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGCC1960.10323233068054334No Hit
AAGCTGGGATTGCAGGCACGGGCCACCGTGCCCGGCCAGCTAATGAGATTTC1960.10323233068054334No Hit
TAGCAGGGATTTATGTGATAAAAAATTAATAAGATTTTCCATTGAGTGGGTA1920.10112554842175675No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)