FastQCFastQC Report
Sat 31 Dec 2022
SRR5846364.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846364.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences251444
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGCCGTCT31481.2519686291977539No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGC27321.0865242360127902No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGT4580.18214791365075325No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTA3410.13561667806748223No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGCTGTCTCTTA2870.11414072318289559No Hit
CCAACAACGTGAAGACGGCCGTGTGCGACATCCCGCCCCGCGGCCTGAAGAT2820.11215220884173017No Hit
AGCTGAGGGAATCCTTTAATATCATCAAATATCATCATTGTTCAAATTTCCA2760.10976599163233164No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)