FastQCFastQC Report
Sat 31 Dec 2022
SRR5846363.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846363.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences249490
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGCCGTCT31981.2818149024008978No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGTATGC25561.0244899595174155No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGT4820.19319411599663314No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACGGATACGTA3560.14269108982323941No Hit
CCAACAACGTGAAGACGGCCGTGTGCGACATCCCGCCCCGCGGCCTGAAGAT2820.11303058238807168No Hit
GCATGTTGAGGGTGACTAAATGAAATCAGTTTTTCCTGACTCATAAGGAGAA2740.10982404104372921No Hit
CTTATACACATCTCCGAGCCCACGAGACGGATACGTATCTCGCTGTCTCTTA2620.10501422902721552No Hit
AGCTGAGGGAATCCTTTAATATCATCAAATATCATCATTGTTCAAATTTCCA2590.1038117760230871No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)