FastQCFastQC Report
Sat 31 Dec 2022
SRR5846349.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846349.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences154671
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTAATGACATCTCGTATGCCGTCT32562.105113434321883No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACATCTCGTATGC32302.0883035604605906No Hit
CTTATACACATCTCCGAGCCCACGAGACCTAATGACACTGTCTCTTATACAC7510.48554674114733853No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGAC7150.4622715311855487No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACACTGTCTCTTA5680.3672310905082401No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACA5040.3258529394650581No Hit
TTAACTGGGGCCTGTCATCCAGATGACTGAAAGTAGTTCATGAAAATCAGGA2190.14159086060088832No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACAACTCGTATGC2120.1370651253305403No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACAT1970.12736712117979454No Hit
CTTATACACATCTCCGAGCCCACGAGACCTAATGACATCCTGTCTCTTATAC1870.12090178507929736No Hit
TGTAAGGGGCTTTCCTTTCAGCGGAGCGCGGCGGCAAGATGGCAGTGCAAAT1550.10021270955770636No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)