FastQCFastQC Report
Sat 31 Dec 2022
SRR5846348.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846348.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences151357
Sequences flagged as poor quality0
Sequence length52
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCTAATGACATCTCGTATGCCGTCT30332.0038716412191047No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACATCTCGTATGC29661.9596054361542579No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGAC7800.5153379097101555No Hit
CTTATACACATCTCCGAGCCCACGAGACCTAATGACACTGTCTCTTATACAC7070.4671075668783076No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACACTGTCTCTTA5250.3468620546126046No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACA4800.31713102136009563No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACAACTCGTATGC2680.17706482025938675No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACAT2090.1380841322172083No Hit
TTAACTGGGGCCTGTCATCCAGATGACTGAAAGTAGTTCATGAAAATCAGGA1820.12024551226570293No Hit
CTTATACACATCTCCGAGCCCACGAGACCTAATGACATCCTGTCTCTTATAC1600.10571034045336522No Hit
GGCTCTGGGATGTGACTGCTTTCTTTCCAAACTCAAATGTGTTGTGTCTTTG1570.10372827156986462No Hit
AGCACCGGAAAGAACATGTAAGAAAAACAATAGATGACTTTAAAAAAGTGAT1560.10306758194203108No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)