FastQCFastQC Report
Sat 31 Dec 2022
SRR5846334.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846334.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences161225
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACATCTCGTATGC29631.8378043107458522No Hit
CTTATACACATCTCCGAGCCCACGAGACCTAATGACATCTCGTATGCCGTCT29421.8247790355093811No Hit
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGAC7400.4589858892851605No Hit
CTTATACACATCTCCGAGCCCACGAGACCTAATGACACTGTCTCTTATACAC6840.4242518219879051No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACACTGTCTCTTA5560.34485966816560704No Hit
ATCTGAAGACTGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACA4460.2766320359745697No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACAACTCGTATGC2240.13893626918902155No Hit
ATCTGAAGCTGTCTCTTATACACATCTCCGAGCCCACGAGACCTAATGACAT2010.12467049154907739No Hit
CTTATACACATCTCCGAGCCCACGAGACCTAATGACATCCTGTCTCTTATAC1910.11846797953171036No Hit
ATAACGGGGATGAAAGCAAAATAAAGAAATTCCCAGATAAACAAAAACAGAA1710.10606295549697628No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)