FastQCFastQC Report
Sat 31 Dec 2022
SRR5846256.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR5846256.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75138
Sequences flagged as poor quality0
Sequence length52
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCCTATCGTATCTCGTATGCCGTCT9611.2789800101147224No Hit
TGTCTCTTATACACATCTCCGAGCCCACGAGACCCTATCGTATCTCGTATGC6590.8770528893502623No Hit
ATATATGGGCTATGAAAGTCCTAGATGGCATCTTCTTCCTACATAAGGCTGT1280.17035321674785062No Hit
GCGCCTGGGGCAAGCCCCATACTTGAAAGTTCTGATTCAGCAGGTCTGGAAT1070.14240464212515638No Hit
GCATAAGGGGGGTCTGATTTTTCAAGAAAGTAAAGGGCAGGACTAGTGAAGT1040.13841198860762863No Hit
GCTGCGGGTGTGAAGGAAATATGTATAAAACAAGCAGGATTATCTTTAATGA1010.13441933509010087No Hit
TCACTAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGC1000.1330884505842583No Hit
ACATTGGGACTCTGGAACATACTTACTTCACATCTGGCAGAGAAAGTTCAAA990.1317575660784157No Hit
GCGAAAGGGGGGGCTTTATTAGGTGACACTGTGAAACTTCTGATGACAATCT980.13042668157257314No Hit
TCCAACGGGCCAAATGGAAAGCGTGGGAGTGGAGACTTGATATTCGGCTTCC980.13042668157257314No Hit
ATCATGGGAAGGGAGGACTACTGTAGTTGGTCAATGTGATTAGGCCATTTGT970.12909579706673055No Hit
TAAAACGGGAAAGTAGATCCATTAGAAACAGCACATGAGCTTATCTTACCAT930.12377225904336021No Hit
TTTTAAGGGGCTGAACCTTGGTGACAGAGTGGGATCCTATCTCAGAATAAAT910.12111049003167505No Hit
TGATAAGGGATATAAATGAAGAAATGAGCTTGGGGAGGCTAAATGTGTCTGC910.12111049003167505No Hit
CAATTGGGGATCCCTACCTGATATTACATCCTATATCTGTTTGTTTTCTGTT900.11977960552583247No Hit
TATGCCGGGGATCGCGGGGGGGTTCAATGCGCCATATTGAAGAGGACGGGTC900.11977960552583247No Hit
TTGTACGGGAACCAAAATATATGCATTTTTCTGGTGTTAGTTCAAGTTTGAT880.1171178365141473No Hit
GTATGGGGGGTGATCAGAGAATTGGTAAAATAGCACACTTAGGACCAAATTC860.11445606750246215No Hit
ATGGCGGGGATACTTTATTCTTTTTAGAGTTGAGTAATATTCCACTGAATGG860.11445606750246215No Hit
GCAAATGGGGGTTCTCCGTGGTGTTCAGGACTCCTAACCTGGACTCCCTCCA850.11312518299661956No Hit
TATGGGGAGTCTCCCTTATGGTCAGTGATTGATGACCTCGATATGGATTTAG840.11179429849077697No Hit
TTTAGAGGGAGATTGGTTGGAGTAAGAAAAATGCATTGATAAATATTACAAA840.11179429849077697No Hit
GAGACTGGGATGGAAGCTTTAAAAGTGAATTGGCTAAATAGGCAAGACCTTC820.1091325294790918No Hit
CCACCGGGATATTTGAAAAGGCTTCCATTAATATAATAGCTTTGCTTGCAGC810.10780164497324922No Hit
GCAGTTGGGAGACTGGGTTGGGGGAGGGGTTCAGGCCTGTTCCCCGCGGCTG810.10780164497324922No Hit
CAGTCCGGGAGGTGACTCTGCTAATCTAACCTGCAGAGCTTTCTTTGGGTAC810.10780164497324922No Hit
TGTCGCGGGGGGATGTGGAATTTTTATACAAGTTATAAGTGTTTGGCATAGT810.10780164497324922No Hit
ATAGAGGGGAGGCATTGAGGCAGCCAGCGCAGGGGCTTCTGCTGAGGGGGCA800.10647076046740665No Hit
GCAACAGGGAAAGCAAGCCGACCACATGGGGCTAATATTGACAGTTCCCATA790.10513987596156406No Hit
CAACGAGGATACTGTCATTGGGGACACAGTAACAGGACTTCTGGAAAGGTGT790.10513987596156406No Hit
ATTAGTGGGGGGAATTCCTGTGGCACAATCGGACTTATTCACGCAGTGGCCA790.10513987596156406No Hit
TAGCTGGGACTACAGGTGCAGACCACTATTCCCATCTGGCTATATTTATAAT790.10513987596156406No Hit
TCATAAGGGAACTTTAAGGTATTTCCATCTCTAGTCAGGAAGATTGCTTCCA790.10513987596156406No Hit
TAACAGGGGTGTTCTAAGAGTTACCATTTTGATACCTTTTAAAAACCAGCAG780.10380899145572148No Hit
GCTAAAGGGTATATAGATTTCCCACATCTGACAATAAGTGGATGCGAATTCG780.10380899145572148No Hit
TCCCTAGGGCTCCCTATGGCAAGATGAAAAACTGAAACATAGACAACCCCCT780.10380899145572148No Hit
AGCTTTGGGACTAATGTTTTAATTTATATAAATTGACCCAGAGAAGACTCTC770.10247810694987888No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)