Basic Statistics
Measure | Value |
---|---|
Filename | SRR5846230.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 200283 |
Sequences flagged as poor quality | 0 |
Sequence length | 52 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACCCTATCGTATCTCGTATGCCGTCT | 1960 | 0.9786152594079377 | No Hit |
TGTCTCTTATACACATCTCCGAGCCCACGAGACCCTATCGTATCTCGTATGC | 1689 | 0.8433067209897994 | No Hit |
ATCTGAAGACCTGTCTCTTATACACATCTCCGAGCCCACGAGACCCTATCGT | 221 | 0.11034386343324197 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TTAAGCG | 35 | 1.0062831E-7 | 46.044243 | 1 |
TAATGCG | 35 | 1.0062831E-7 | 46.044243 | 1 |
TTTAGCG | 25 | 3.3876833E-5 | 46.04424 | 1 |
AAATACG | 25 | 3.3876833E-5 | 46.04424 | 1 |
TTTCGAG | 25 | 3.3876833E-5 | 46.04424 | 1 |
CATTGCG | 25 | 3.3876833E-5 | 46.04424 | 1 |
CGCATAG | 60 | 0.0 | 46.04424 | 1 |
TTCGTAG | 30 | 1.8414194E-6 | 46.04424 | 1 |
GCGCATG | 30 | 1.8414194E-6 | 46.04424 | 1 |
TACATCG | 25 | 3.3876833E-5 | 46.04424 | 1 |
GATGCCG | 25 | 3.3876833E-5 | 46.04424 | 1 |
ACGTATG | 30 | 1.8414194E-6 | 46.04424 | 1 |
GGCGCAG | 30 | 1.8414194E-6 | 46.04424 | 1 |
TGCAACG | 30 | 1.8414194E-6 | 46.04424 | 1 |
TAATCCG | 25 | 3.3876833E-5 | 46.04424 | 1 |
GTCTGCG | 20 | 6.2691345E-4 | 46.044235 | 1 |
ACATTCG | 20 | 6.2691345E-4 | 46.044235 | 1 |
TGTTGCG | 20 | 6.2691345E-4 | 46.044235 | 1 |
CTTATCG | 20 | 6.2691345E-4 | 46.044235 | 1 |
CGCTAAG | 20 | 6.2691345E-4 | 46.044235 | 1 |